Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0047 ATGGCTCAGGGAAGTAGTACAACGATTTTTCTGCTGCTACTATTTCCCATGTTGGTGCTTTACTCCGAGATGGTTCGTGCAGACACTTACACGGTTGGGAATGCAGGCCGTTGGACCTTTGATGTTGTTGACTGGCCTAATGGAAAGAGTTTTAAGGCTGGCGATACACTCGTATTCAATTATTGTCCTCGGTTCCACAACGTGGTGGCAGTGGACGAGGCTGGTTACAAAACATGCAGTTCTGCAAAAGGAGTCAAAGTGTATCAGTCAGGAAAGGATGAGATTCAGCTTGCCCCGGGACAGAACTACTTCATCTCCGGTTTTCCTGATAACTGCCAGATGGGGATGAAAATTGCAGTAAATGCTGCCTGA 372 0.4704 MAQGSSTTIFLLLLFPMLVLYSEMVRADTYTVGNAGRWTFDVVDWPNGKSFKAGDTLVFNYCPRFHNVVAVDEAGYKTCSSAKGVKVYQSGKDEIQLAPGQNYFISGFPDNCQMGMKIAVNAA 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0047 123 SUPERFAMILY Cupredoxins 29 122 IPR008972 -
Ssu1g0047 123 CDD Plantacyanin 29 122 IPR041844 -
Ssu1g0047 123 PANTHER BASIC BLUE-LIKE PROTEIN 11 121 - -
Ssu1g0047 123 Gene3D - 26 123 IPR008972 -
Ssu1g0047 123 Pfam Plastocyanin-like domain 42 116 IPR003245 GO:0009055
Ssu1g0047 123 PANTHER BLUE COPPER PROTEIN 11 121 IPR039391 GO:0009055
Ssu1g0047 123 ProSiteProfiles Phytocyanin domain profile. 28 123 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0047 Ssu-Chr1 1949220 1951400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0047 1 122 Phytocyanin Superfamily AT1G17800 33.824 3.33e-20 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0047 - - zju:107427848 149.443