Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0044 ATGGTGAAGAAAGGTCCATGTTTGCACTGCGGAATTAGTTCTACTCCACTTTGGCGTAATGGACCAATTGAGAAGCCGGTGTTGTGTAACGCTTGTGGATCGCGATATAAGTTGAAAGGACACCTTGACAATTATCTCCCCAAGAATGTCCAACTTCAGTTACACCACAAGaactttaaaaatgtatatggTGGAAGCCATCTCAATGTTGAGGACGAACTTTCAAACCATGCTCCACCTACGGATAATGGAAACAGCAATAAGTCAACCCCAGATTTCCATCACATATCACCACAAGATTTTGGGAACAAAATCCCTTCAAGGAAACGATCACCGGTGGTGTATAAGCAGATGACACCGATGGAGAAGTTTCAAAAGCAGCTTCTCAGTTTGTTCAGAGGTCAAAGGCAACCAAATGAGTCATCCTCAGAAGAGATTTTGTTGCTGGATAACGTGAACAACTTCATACCCAGAAATGAGATTGGACTTGGAGCCATTCTTCTTAAGACGGATGTTGCTTCTACAGATCCGGGATCATTCACATGCTCCTCGATAGATAACCAAGCACAATGTGAATCATCTACAACTGGGGCCTGA 597 0.4238 MVKKGPCLHCGISSTPLWRNGPIEKPVLCNACGSRYKLKGHLDNYLPKNVQLQLHHKNFKNVYGGSHLNVEDELSNHAPPTDNGNSNKSTPDFHHISPQDFGNKIPSRKRSPVVYKQMTPMEKFQKQLLSLFRGQRQPNESSSEEILLLDNVNNFIPRNEIGLGAILLKTDVASTDPGSFTCSSIDNQAQCESSTTGA 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0044 198 Gene3D - 3 63 IPR013088 GO:0006355|GO:0008270
Ssu1g0044 198 PANTHER OSJNBB0038F03.10 PROTEIN 12 175 IPR044589 -
Ssu1g0044 198 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Ssu1g0044 198 PANTHER GATA ZINC FINGER PROTEIN 12 175 - -
Ssu1g0044 198 MobiDBLite consensus disorder prediction 71 108 - -
Ssu1g0044 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 48 - -
Ssu1g0044 198 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Ssu1g0044 198 MobiDBLite consensus disorder prediction 76 96 - -
Ssu1g0044 198 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Ssu1g0044 198 SMART GATA_3 1 51 IPR000679 GO:0006355|GO:0043565
Ssu1g0044 198 CDD ZnF_GATA 6 41 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0044 Ssu-Chr1 1913057 1917191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0044 1 169 C2C2-Gata Transcription Factor Family AT4G17570 30.415 6.04e-24 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu1g0044 GATA 3.5e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0044 - - ccaj:109803880 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2041 5 58883750 58884877 Ssu1g0044 1 1913057 1917191 PCT
Ssu1g0044 1 1913057 1917191 Ssu5g2608 5 70730584 70733098 PCT