Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0041 ATGCCAAAGTCGAAGCGAAATAGACAAGTTACGCTATCGAAGACGAAGAAAAAGGGAAGGGATCACAAAGAGACGATAGTGAACGGAATAAAAGAGGCGGCAGAAAAGTACGGGTGGGTGTACGTGTTCTCGTTCGAGAACATGAGGAATCAGAAATTCAAGGAGTTCAGGGAACAGCTGAAATCGAGTAGCAGGTTCTTTCTCGGCTCTAACAAAGTAATGCAGGTCGCTCTAGGTCGCTCCGCCGCAGATGAGGTCAGACCCGGCCTTCACAAGGTTTCAAAGCTGTTGCGTGGAGATGCTGGGATGTTTTTTACGAATTTGTCTAAAGAAGAAGTTGAAAGGCTGTTTAAAGAATTTGAGGAATATGACTTTGCAAGAACAGGAAGCATTGCCACTGAGAAGGTGGATCTCAAAGAGGGCCCTTTAGAGCAGTTCACGCATGAGATGGAACCTTTTCTCCGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGGAGTTGTGGAGCTTGTTTCGGATTTTATTGTTTGTGAGGAGGGGAAGCCCTTGTCACCTGAGGCTGCTCGCATACtgCGTTTAATGGGAATCAAGATGGCTACATTTCGGCTTCACCTAATTTGCAGGTGGAGTCCCGATGAGTTTGAACTTTACATTGATGGGCCGGATGAATCAGATGTTGAATGCTCGTAG 690 0.4609 MPKSKRNRQVTLSKTKKKGRDHKETIVNGIKEAAEKYGWVYVFSFENMRNQKFKEFREQLKSSSRFFLGSNKVMQVALGRSAADEVRPGLHKVSKLLRGDAGMFFTNLSKEEVERLFKEFEEYDFARTGSIATEKVDLKEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFIVCEEGKPLSPEAARILRLMGIKMATFRLHLICRWSPDEFELYIDGPDESDVECS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0041 229 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 1 228 - -
Ssu1g0041 229 Gene3D - 30 211 IPR043141 -
Ssu1g0041 229 Pfam Ribosomal protein L10 19 120 IPR001790 -
Ssu1g0041 229 MobiDBLite consensus disorder prediction 1 16 - -
Ssu1g0041 229 Gene3D - 125 198 IPR043164 -
Ssu1g0041 229 MobiDBLite consensus disorder prediction 1 22 - -
Ssu1g0041 229 CDD Ribosomal_P0_like 21 184 IPR033867 GO:0000027
Ssu1g0041 229 PANTHER RIBOSOME ASSEMBLY FACTOR MRT4 1 228 - -
Ssu1g0041 229 Pfam Insertion domain in 60S ribosomal protein L10P 126 196 IPR040637 -
Ssu1g0041 229 SUPERFAMILY Ribosomal protein L10-like 20 144 IPR043141 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0041 35 203 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 21.302 3.47e-10 57.0