Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0038 ATGGCCCCTGAGGTTGTTAACTTGAGGAACCATGGATGTGGACTAGCAGCTGATATATGGAGCTTAGGATGTGCAGTTTTAGAGATGTTGACACGGCAACCTCCTTACTCTCACTTGGAAGTAaAGCAAGCGTTATTTCGGATTCGCAGGGGTCAACCTCCACCTGTTCCGGAATCCTTGTCGACAGATGCCCGAGATTTCATTCTTAAATGCTTACAAGTAAACCCAAACAAACGGCCAGCTGCTGCTCAGCTATTGGACCATTCATTTGTCCATAGATCACTTGTATCTCCCATAAATCCTGTTTCTCCAAGTATTAATCTTTTACTGTCTTAA 336 0.4405 MAPEVVNLRNHGCGLAADIWSLGCAVLEMLTRQPPYSHLEVKQALFRIRRGQPPPVPESLSTDARDFILKCLQVNPNKRPAAAQLLDHSFVHRSLVSPINPVSPSINLLLS 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0038 111 ProSiteProfiles Protein kinase domain profile. 1 91 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0038 111 Pfam Protein kinase domain 1 91 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0038 111 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 97 - -
Ssu1g0038 111 Gene3D Transferase(Phosphotransferase) domain 1 1 100 - -
Ssu1g0038 111 PANTHER BNAA02G34600D PROTEIN 1 97 - -
Ssu1g0038 111 SUPERFAMILY Protein kinase-like (PK-like) 1 106 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0038 Ssu-Chr1 1863286 1864150 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0038 1 95 MAP Kinase Kinase Kinase AT4G08500 65.625 8.25e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Ssu1g0038 Pkinase 9.6e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0038 - K13414 gmx:100806902 196.823