Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0037 ATGGATAGTGAAATTGAGATCATTGAAATGGCCGATATCATAATTGATGGAAGAAGTTTTACTTCGGCAGTGGACAGGGCGATAAGGAGCACGACTGCCTCAAAGTCGGGAGAATCCAGTGTTCATAGTTTTGCTTCGGTAGTGAGCAGTGCTATAAGGAGTAGGACTGCGCTGAATTTGGGAGAATCTCGAGTCCATAGTTTTGCTTCGGTAGTGAGCAGTGCTATAAGGAGTAGGACTGTGTTGAATTTGGGAGAATCTGGAGTCCATAGTTTTGCTTCGGTAGTGGACAGTGCGATAAGGAGTAGGACTGCGCTAAACTtgagaggaagaaagaagaaagagtcaGTGCGTAAGGGTGAGCTGAAGCGGTTGAAGCCGCGGCTTGAGCGACGGAACGCCACGAAGAACATCGATTACGAATTGAAGGAGGAGGACGCAGACAGAGCTTATTTGAACCAAAGGAGTTTCCGGGTGAATGGAATGGACGGCGAATTCGACCGTATCTTTCGCAGCCTGGGCCTGTCTGGGCCCGAGGACTTTGCCATCCCAGTTGCAGCTTGGCAAGAAGCCCAGGCCCAAAAGGCTCGAGTTGCTTCTACTCCTCGTAGAACCGTCAACCTCCAACTCCAAAAGCCGAGAGAGGAGGGAATAAAGGGCGTTAGGCCTCCCGTTTTGGTGCTGCCGCCGGTCACCTCTACTTGGAGCTCCCAACAACAAACGGAGAGGGATCCACTTTCTGATTCTGTGTCACGTGATGACGCTGAAGCTCAAACTGAAGAGGCTTCTGCTTTGGTTGACGAGTCCTTTCATATTCTTATTCATAATCAGAATCTGTCGCCAAATGGAAATAGGTCTTTCCGGGAGTGGCAAAAGGGTGAGATGTTAGGAAAGGGGTCCTTTGGAACCGTCTATGAAGGCTTCACAAATGATGGAAACTTTTTTGCTGTAAAGGAGGTGTCTTTACTGGATGACGGAAGCCAGGGCAAACAGAGCATTTTCCAACTTCAACAGGAAATATCTCTTTTGAGTCAGTTCAGACATGACAACATAGTTCGATATCTTGGTACAGACAAGGACAATGATAAGCTGTATATCTTCCTCGAGCTTGTAACAAAAGGATCATTGGCAAGTCTCTATAAAAAATATCGTTTAAGGGACTCTCAAGTTTCTGCATACACAAGGCAGATTTTGAGTGGCTTGAAGTATCTTCATGATCGTAGTGTAGTTCACAGggACATCAAGTGTGCCAATATATTAGTTGATGCAAATGGGTCAGTCAAGCTTGCGGATTTTGGATTGGCAAAGGTGCCTTTGTTTAGAAAAATCAACTTTCTCAAGTCAGCATCTTATCATAGCAAATTCCAAATGCTAAACACTTGCAATTATATTGTTGGTTCTTTTTCCTTTGCAGGCAACCAAATATGTTAA 1431 0.4458 MDSEIEIIEMADIIIDGRSFTSAVDRAIRSTTASKSGESSVHSFASVVSSAIRSRTALNLGESRVHSFASVVSSAIRSRTVLNLGESGVHSFASVVDSAIRSRTALNLRGRKKKESVRKGELKRLKPRLERRNATKNIDYELKEEDADRAYLNQRSFRVNGMDGEFDRIFRSLGLSGPEDFAIPVAAWQEAQAQKARVASTPRRTVNLQLQKPREEGIKGVRPPVLVLPPVTSTWSSQQQTERDPLSDSVSRDDAEAQTEEASALVDESFHILIHNQNLSPNGNRSFREWQKGEMLGKGSFGTVYEGFTNDGNFFAVKEVSLLDDGSQGKQSIFQLQQEISLLSQFRHDNIVRYLGTDKDNDKLYIFLELVTKGSLASLYKKYRLRDSQVSAYTRQILSGLKYLHDRSVVHRDIKCANILVDANGSVKLADFGLAKVPLFRKINFLKSASYHSKFQMLNTCNYIVGSFSFAGNQIC 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0037 476 SUPERFAMILY Protein kinase-like (PK-like) 282 438 IPR011009 -
Ssu1g0037 476 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 123 193 - -
Ssu1g0037 476 MobiDBLite consensus disorder prediction 230 258 - -
Ssu1g0037 476 Pfam Protein kinase domain 291 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0037 476 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 214 452 - -
Ssu1g0037 476 MobiDBLite consensus disorder prediction 230 245 - -
Ssu1g0037 476 Gene3D Transferase(Phosphotransferase) domain 1 287 464 - -
Ssu1g0037 476 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Ssu1g0037 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Ssu1g0037 476 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 123 193 - -
Ssu1g0037 476 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 214 452 - -
Ssu1g0037 476 SMART serkin_6 290 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0037 476 ProSiteProfiles Protein kinase domain profile. 290 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0037 Ssu-Chr1 1859779 1863260 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0037 218 459 MAP Kinase Kinase Kinase AT4G08500 48.582 2.99e-75 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Ssu1g0037 Pkinase 7.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0037 - K13414 gmx:100806902 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1997 5 57695750 57700738 Ssu1g0037 1 1859779 1863260 PCT