Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0036 ATGGAGGGTGAGCGGAAGCGGTCGAAGCCGCGGCTTGAGCGGCGAAACGCCATGAAGAACATCGATTTCGAATTGAAGGAGGAGGACGCAGACACGGACATAGACACAGCTTATTTGAATCAAAGGAGTTTCCGGGTGAAAGGAATCGACGGCGAATTCGACCGTATCTTTCGCAGCCTGGGCCTGTCTGGGCCCGAGGACTTTGCCATCCCAGCTGCAGCTTGGCAGCAGGCCCAGGCCCAAAAGGCTCGAGTTGTTTCTCCTCCTCGCAGCACCGTCAACCTCCAGCTCGAAACGttacaaaaccaaaaacagAGAGAGGGGGGAATAAAGGGCGTTAGGCCTCCCATTTTGGAACCGCCGCCGGTTACCTCTACTTGGAGCAACCAACGACAAACGGAGAGGGATCCACTTtctgatgatgatgatagtgaCGTTGGTGCTGAAGCTCAAACTGAAGAGGCTTCTGCTTTGGTTGACGAgtcctttcaaatttatagtcTGTCGCCAAATGGAAATGGGTATTTCCGGTCGTGGCAAAAGGGCGAGATCTTAGGAAAGGGGTCATTTGGAACCGTCTATGAAGGCTTCACCGATGATGGGAACTTTTTTGCTGTAAAGGAGGTGTCTTTACTGGATGATGGCAGCCAGGGCAAACAGAGCATTTTCCAACTTCAGCAGGAAATATCTCTTTTGAGTCAGTTCCGACATGAAAACATAGTTCGATATCTTGGCACAGACAAGGATAATGATAAGCTGTATATCTTCCTCGAGCTTGTAACAAAAGGGTCATTGGCAAGTCTCTATCAAAAGTATCGTTTAGGGGACTCTCAAGTTTCTGCATACACAAGGCAGATTTTGAGTGGCTTGAAATATCTTCATGATCGTAATGTGGTTCACAGggaCATCAAGTGTGCCAATATATTGGTTGATGCAAATGGGTCCGTCAAGCTTGCAGATTTTGGATTGGCAAAGGCAACCAAGTTGAATGATGTTAAATCAAGTAAAGGCTCCCCGTACTGGATGGCCCCTGAGGTTGTTAACTTGAGGAACCGAGGCTATGGACTAGCAGCTGATATATGGAGCTTAGGATGTACAGTTTTAGAGATGTTGACACGGCAACCTCCTTACTCTCACTTGGAAGGAATGCAAGCGTTATTTCGGATTGGCAGGGGTCAACCTCCACCTGTTCCTGAATCCTTGTCAATAGATGCCCGAGATTTCATTCTTAAATGCTTACAAGTTAACCCAAATAAACGGCCAACTGCTGCTCAGCTATTGGACCATTCATTTGTAAATAGACCACTTTTATCTCCCATAAGTCCTGTTTCTCCAAGTATTAATCTTTTACTGTCTTAA 1359 0.4525 MEGERKRSKPRLERRNAMKNIDFELKEEDADTDIDTAYLNQRSFRVKGIDGEFDRIFRSLGLSGPEDFAIPAAAWQQAQAQKARVVSPPRSTVNLQLETLQNQKQREGGIKGVRPPILEPPPVTSTWSNQRQTERDPLSDDDDSDVGAEAQTEEASALVDESFQIYSLSPNGNGYFRSWQKGEILGKGSFGTVYEGFTDDGNFFAVKEVSLLDDGSQGKQSIFQLQQEISLLSQFRHENIVRYLGTDKDNDKLYIFLELVTKGSLASLYQKYRLGDSQVSAYTRQILSGLKYLHDRNVVHRDIKCANILVDANGSVKLADFGLAKATKLNDVKSSKGSPYWMAPEVVNLRNRGYGLAADIWSLGCTVLEMLTRQPPYSHLEGMQALFRIGRGQPPPVPESLSIDARDFILKCLQVNPNKRPTAAQLLDHSFVNRPLLSPISPVSPSINLLLS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0036 452 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 102 434 - -
Ssu1g0036 452 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 5 80 - -
Ssu1g0036 452 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 102 434 - -
Ssu1g0036 452 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 5 80 - -
Ssu1g0036 452 SUPERFAMILY Protein kinase-like (PK-like) 173 446 IPR011009 -
Ssu1g0036 452 ProSitePatterns Protein kinases ATP-binding region signature. 185 207 IPR017441 GO:0005524
Ssu1g0036 452 ProSiteProfiles Protein kinase domain profile. 179 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0036 452 SMART serkin_6 179 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0036 452 MobiDBLite consensus disorder prediction 99 152 - -
Ssu1g0036 452 Pfam Protein kinase domain 180 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0036 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 298 310 IPR008271 GO:0004672|GO:0006468
Ssu1g0036 452 Gene3D Transferase(Phosphotransferase) domain 1 177 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0036 Ssu-Chr1 1848798 1853362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0036 110 436 MAP Kinase Kinase Kinase AT4G08500 55.882 1.14e-135 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Ssu1g0036 Pkinase 8.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0036 - - var:108347588 711.064