Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0031 ATGAGCATCAGCCTCCAAGATTTGTTCACCTCTGTTGCCAGAAACGACGCCGTGCTGACCCCTCATGCTCATCGAGGAAGAGGGAAAAAAAGGGCCGTGGAGGAACCCCTCGTTGATAAGGCCACTCTTCTGAAGCAGAAAAGGATGATCAAGAACAGAGAATCCGCCGCTAGGTCCAGGGAACGCAAGCAGGCTTACACAGTTGAGCTAGAGTCTTTGGTTACGCATCTGGAGGAAGAGAATGCTCGATTGTTAAGGGAAGAGGCGGATAGGAAAAGGCAGAGGTTCAATCAGCTCATGGAGTACCTTATTCCAGTTGAGGAGAAGCGTAAACCAAGACGAATGCTTCGGAGAGTGAATTCGGCCCAATGGATCACTCTGGAGTTACATTACTGTATAGAGAAAATAGCTGCGGCCAAATAA 423 0.4894 MSISLQDLFTSVARNDAVLTPHAHRGRGKKRAVEEPLVDKATLLKQKRMIKNRESAARSRERKQAYTVELESLVTHLEEENARLLREEADRKRQRFNQLMEYLIPVEEKRKPRRMLRRVNSAQWITLELHYCIEKIAAAK 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0031 140 Pfam bZIP transcription factor 42 94 IPR004827 GO:0003700|GO:0006355
Ssu1g0031 140 SUPERFAMILY Leucine zipper domain 45 94 IPR046347 GO:0003700|GO:0006355
Ssu1g0031 140 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 45 94 IPR004827 GO:0003700|GO:0006355
Ssu1g0031 140 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 22 123 IPR043452 GO:0003700|GO:0045893
Ssu1g0031 140 Gene3D - 45 100 - -
Ssu1g0031 140 PANTHER OS05G0437700 PROTEIN 22 123 - -
Ssu1g0031 140 CDD bZIP_plant_BZIP46 45 86 - -
Ssu1g0031 140 Coils Coil 67 94 - -
Ssu1g0031 140 SMART brlzneu 40 104 IPR004827 GO:0003700|GO:0006355
Ssu1g0031 140 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 47 62 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0031 Ssu-Chr1 1788993 1792176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0031 19 124 bZIP Transcription Factor Family AT5G44080 55.963 1.88e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu1g0031 bZIP_1 6.3e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0031 K14432 - gmx:100101878 172.17