Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0030 ATGAGTTGGGAATTAAACATCGAGGTGGTGGACAGAAAATGCATCAAACCCTCCACCGCCACACCCCCACACCTCAAAACCTTCAAACTCTCCCTACTGGACCAGCTTTCCTCTGAGATCTACGGCAACATGACCCTCTTCTACCCTAACAACCCCGCCACCGACGCACTTCACTTCTCCACCAAATCCCAACTGCTCCAAACCTCCCTCTCCCAAACGTTGACCCGCCTCTACCCCCTCGCCGGCCGCCTCCACGACGCCGCCACCGTCCGCTGCAACGACGACGGCGCCCTCTTCATCGAGTCCCGAACCGACGCCTCCCTCTCCGACATCCTCACAGCCCCAAACTTCGACACTCTCCAATGTTTCCTCCCCTCCGCCGACACAACAACCTCGAACGCTCCCATTCTCCTCGTCCGCTTCACCGCCTTCCGCTGCGGCGGCACCGCCGTGACCATATTGCTATCCCACAAGATCGCCGACATAGCCGCCGTGGTCGCACTCCTCAAAACCTGGACCGCCGCGTGCGCCGGAGCCACCGTGGCGGAGGTCCCGGAACTCGCCGCCGGCGCCGCTCTCTTTCCACCGAGGGACATTCCCGGCGCGACCGCTTCCGTGAACACCGTCTCATCCGACAAGTTTGCCTCTAGAAGGTTCGTTTTCGACGCGTCCAAGGTTAGAGAGCTAAAGGACAGAGTCAAAGGCGCGCGCGAAATTCGAGAACGCGAAGATTGCGTGTTTGAACCTTCGAGAGTGGAGGCGGTGCTGGCGCTCATTTGGAAATGCGCTCTGTCGGCTTCGCGCTCCAAGACGGAGTCGTTTAAGCGTTCGGTTTTGTTCCAGGCAGTGAACCTCCGTCCGCGGGTGGATCCGGCGGTGCCGGACGCCGCCGTGGGGAACTTTGTGTGGCCGTTCGCGGTGACGGCGGAGGAGGAGAGGCACGTGGAGTTGCACGTGCTGGTGAGGAGAATGAGGGAGAGTATGAGGGAGTTTTTGGACACGAAGGCAGCGAGGTTCAAAGAGGATGGTGCGTTTGGAGTGGTGATGGAGAGTCTGAAGGAGAGGGGTGAACTTTTGAGGAAGTGCAAGGACACTACTGTGGTTTATAAGTGTACGAGTTGGTGTAAGTTTCCACTGCTTAAGGTTGATTTTGGCTGGGGGGAACCAGTGTGGATGTGCAGTGTGAATAGGGTTGTGAGTAATACCATTGCCTTGATGGACACCAAGGATGGTGGGGTTGAAGCTTTTGTGACTCTTGATGACCAAGAGATGGCCCTTTTTCAACAAGATGAGGAGTTGCTACATTATGCTTTGCTTAATCCTAGTGTTATGCTCTGA 1338 0.5695 MSWELNIEVVDRKCIKPSTATPPHLKTFKLSLLDQLSSEIYGNMTLFYPNNPATDALHFSTKSQLLQTSLSQTLTRLYPLAGRLHDAATVRCNDDGALFIESRTDASLSDILTAPNFDTLQCFLPSADTTTSNAPILLVRFTAFRCGGTAVTILLSHKIADIAAVVALLKTWTAACAGATVAEVPELAAGAALFPPRDIPGATASVNTVSSDKFASRRFVFDASKVRELKDRVKGAREIREREDCVFEPSRVEAVLALIWKCALSASRSKTESFKRSVLFQAVNLRPRVDPAVPDAAVGNFVWPFAVTAEEERHVELHVLVRRMRESMREFLDTKAARFKEDGAFGVVMESLKERGELLRKCKDTTVVYKCTSWCKFPLLKVDFGWGEPVWMCSVNRVVSNTIALMDTKDGGVEAFVTLDDQEMALFQQDEELLHYALLNPSVML 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0030 445 Pfam Transferase family 6 433 - -
Ssu1g0030 445 Gene3D - 4 201 IPR023213 -
Ssu1g0030 445 Gene3D - 211 436 IPR023213 -
Ssu1g0030 445 PANTHER VINORINE SYNTHASE-RELATED 4 444 - -
Ssu1g0030 445 PANTHER F21J9.9 4 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0030 Ssu-Chr1 1779074 1780411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0030 5 429 Monolignol Biosynthesis Gene Families AT5G48930 22.222 2.14e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0030 - - gmx:100808502 647.121