Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu1g0025 | ATGTCATTCCGCAGCATAGTTCGTGATGTGAGGGATAGTTTTGGGAGCTTATCTAGGCGGAGTTTTGACGTCAGACTTACTGGTCATCATAGAGGAAAATCTCAAGGATCGGTGCAGGATTTGCATGACCAACCTCTAGTAATTCAAAATAGCCGCTGGGCGAGCTTACCTCCGGAATTACTATTTGATATCATTAGACGGCTAGAGGAGAGTGAGAATACATGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGCAGTTTGCCAGTCCTGGAGGAATATGTGCAAGGAAATCGTTAAGAGCCCAGAGTTCTGTGGCAAACTCACATTCCCTGTGTCCTTGAAGCAGCCTGGGCCACGGGATGGAAGTGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTAATTTAACATACCACCTATTCCTCTGTCTCAGCCCTGCTTTGACAGTTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGGACACGGAGAACAACTTACACTGAGTATGTTATTTCCATGGATGCTGACAACATCTCTAGATCAAGTAACACTTACATCGGAAAGCTGAGATCAAATTTTCTTGGTACAAAATTCATTATATACGATACACAGCCTCCATACTCTTCTGCCCATATATGCCCTCCTGGGACTGGGAAGACGAGCCGCAGATTTTATTCCAAAAAGGTCTCGCCTAAGGTCCCATCTGGGAGTTACAACATAGCTCAGGTAACATATGAATTGAATGTGCTTGGGACTCGAGGCCCAAGAAAGATGCACTGCGTTATGCATTCAATACCAGCTTCAGCACTTGATGTGGGTGGCACTGTTCCCGGCCAGCCAGAGCTTCTTCCCCGTTCCCTGGAGGACTCGTTTCGGAGCATCTCGTTTTCAAAGTCTCTAGATCGTTCTATTGAGTTCAGCAGTTCGCGGTTTTCTGAGATTGGGGAATCCTGTAACGAGGATGATGATGGCAAGATGAGACCCTTGGTTCTGAAAAACAAGCCTCCAAGATGGCATGAACAGTTACAATGTTGGTGCCTTAATTTCCGTGGACGAGTAACGGTTGCTTCTGTTAAAAACTTTCAGTTGATTGCTGCCACCCAACCAGCTGCTGGTGCACCCACACCATCTCAACCGGCTCCACCGGAACATGATAAGATCATTCTTCAGTTTGGCAAAGTTGAGAAAGACATGTTCACCATGGATTATCGGTACCCTTTATCTGCATTCCAAGCTTTTGCCATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAG | 1290 | 0.4535 | MSFRSIVRDVRDSFGSLSRRSFDVRLTGHHRGKSQGSVQDLHDQPLVIQNSRWASLPPELLFDIIRRLEESENTWPARKHVVACAAVCQSWRNMCKEIVKSPEFCGKLTFPVSLKQPGPRDGSGIIQCFIKRDKSNLTYHLFLCLSPALTVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYSSAHICPPGTGKTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCVMHSIPASALDVGGTVPGQPELLPRSLEDSFRSISFSKSLDRSIEFSSSRFSEIGESCNEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVEKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 429 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu1g0025 | 429 | Gene3D | - | 48 | 101 | - | - | |
Ssu1g0025 | 429 | Pfam | F-box domain | 53 | 100 | IPR001810 | GO:0005515 | |
Ssu1g0025 | 429 | PRINTS | Tubby superfamily signature | 187 | 211 | IPR000007 | - | |
Ssu1g0025 | 429 | PRINTS | Tubby superfamily signature | 239 | 266 | IPR000007 | - | |
Ssu1g0025 | 429 | PRINTS | Tubby superfamily signature | 171 | 187 | IPR000007 | - | |
Ssu1g0025 | 429 | PRINTS | Tubby superfamily signature | 333 | 350 | IPR000007 | - | |
Ssu1g0025 | 429 | PRINTS | Tubby superfamily signature | 407 | 429 | IPR000007 | - | |
Ssu1g0025 | 429 | PRINTS | Tubby superfamily signature | 351 | 367 | IPR000007 | - | |
Ssu1g0025 | 429 | PRINTS | Tubby superfamily signature | 386 | 405 | IPR000007 | - | |
Ssu1g0025 | 429 | Gene3D | Tubby Protein; Chain A | 112 | 423 | IPR025659 | - | |
Ssu1g0025 | 429 | Pfam | Tub family | 114 | 424 | IPR000007 | - | |
Ssu1g0025 | 429 | ProSitePatterns | Tub family signature 2. | 414 | 429 | IPR018066 | - | |
Ssu1g0025 | 429 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 10-RELATED | 1 | 429 | - | - | |
Ssu1g0025 | 429 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 429 | IPR025659 | - | |
Ssu1g0025 | 429 | SUPERFAMILY | F-box domain | 49 | 97 | IPR036047 | GO:0005515 | |
Ssu1g0025 | 429 | ProSitePatterns | Tub family signature 1. | 351 | 364 | IPR018066 | - | |
Ssu1g0025 | 429 | PANTHER | TUBBY-RELATED | 1 | 429 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu1g0025 | Ssu-Chr1 | 1716833 | 1719628 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu1g0025 | 1 | 429 | TUB Transcription Factor Family | AT1G76900 | 69.742 | 0.0 | 609 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Ssu1g0025 | Tub | 5.5e-116 | CL0395 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu1g0025 | K19600 | - | gmx:100814578 | 818.15 |