Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0025 ATGTCATTCCGCAGCATAGTTCGTGATGTGAGGGATAGTTTTGGGAGCTTATCTAGGCGGAGTTTTGACGTCAGACTTACTGGTCATCATAGAGGAAAATCTCAAGGATCGGTGCAGGATTTGCATGACCAACCTCTAGTAATTCAAAATAGCCGCTGGGCGAGCTTACCTCCGGAATTACTATTTGATATCATTAGACGGCTAGAGGAGAGTGAGAATACATGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGCAGTTTGCCAGTCCTGGAGGAATATGTGCAAGGAAATCGTTAAGAGCCCAGAGTTCTGTGGCAAACTCACATTCCCTGTGTCCTTGAAGCAGCCTGGGCCACGGGATGGAAGTGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTAATTTAACATACCACCTATTCCTCTGTCTCAGCCCTGCTTTGACAGTTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGGACACGGAGAACAACTTACACTGAGTATGTTATTTCCATGGATGCTGACAACATCTCTAGATCAAGTAACACTTACATCGGAAAGCTGAGATCAAATTTTCTTGGTACAAAATTCATTATATACGATACACAGCCTCCATACTCTTCTGCCCATATATGCCCTCCTGGGACTGGGAAGACGAGCCGCAGATTTTATTCCAAAAAGGTCTCGCCTAAGGTCCCATCTGGGAGTTACAACATAGCTCAGGTAACATATGAATTGAATGTGCTTGGGACTCGAGGCCCAAGAAAGATGCACTGCGTTATGCATTCAATACCAGCTTCAGCACTTGATGTGGGTGGCACTGTTCCCGGCCAGCCAGAGCTTCTTCCCCGTTCCCTGGAGGACTCGTTTCGGAGCATCTCGTTTTCAAAGTCTCTAGATCGTTCTATTGAGTTCAGCAGTTCGCGGTTTTCTGAGATTGGGGAATCCTGTAACGAGGATGATGATGGCAAGATGAGACCCTTGGTTCTGAAAAACAAGCCTCCAAGATGGCATGAACAGTTACAATGTTGGTGCCTTAATTTCCGTGGACGAGTAACGGTTGCTTCTGTTAAAAACTTTCAGTTGATTGCTGCCACCCAACCAGCTGCTGGTGCACCCACACCATCTCAACCGGCTCCACCGGAACATGATAAGATCATTCTTCAGTTTGGCAAAGTTGAGAAAGACATGTTCACCATGGATTATCGGTACCCTTTATCTGCATTCCAAGCTTTTGCCATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAG 1290 0.4535 MSFRSIVRDVRDSFGSLSRRSFDVRLTGHHRGKSQGSVQDLHDQPLVIQNSRWASLPPELLFDIIRRLEESENTWPARKHVVACAAVCQSWRNMCKEIVKSPEFCGKLTFPVSLKQPGPRDGSGIIQCFIKRDKSNLTYHLFLCLSPALTVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYSSAHICPPGTGKTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCVMHSIPASALDVGGTVPGQPELLPRSLEDSFRSISFSKSLDRSIEFSSSRFSEIGESCNEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVEKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0025 429 Gene3D - 48 101 - -
Ssu1g0025 429 Pfam F-box domain 53 100 IPR001810 GO:0005515
Ssu1g0025 429 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Ssu1g0025 429 PRINTS Tubby superfamily signature 239 266 IPR000007 -
Ssu1g0025 429 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Ssu1g0025 429 PRINTS Tubby superfamily signature 333 350 IPR000007 -
Ssu1g0025 429 PRINTS Tubby superfamily signature 407 429 IPR000007 -
Ssu1g0025 429 PRINTS Tubby superfamily signature 351 367 IPR000007 -
Ssu1g0025 429 PRINTS Tubby superfamily signature 386 405 IPR000007 -
Ssu1g0025 429 Gene3D Tubby Protein; Chain A 112 423 IPR025659 -
Ssu1g0025 429 Pfam Tub family 114 424 IPR000007 -
Ssu1g0025 429 ProSitePatterns Tub family signature 2. 414 429 IPR018066 -
Ssu1g0025 429 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 429 - -
Ssu1g0025 429 SUPERFAMILY Tubby C-terminal domain-like 102 429 IPR025659 -
Ssu1g0025 429 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
Ssu1g0025 429 ProSitePatterns Tub family signature 1. 351 364 IPR018066 -
Ssu1g0025 429 PANTHER TUBBY-RELATED 1 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0025 Ssu-Chr1 1716833 1719628 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0025 1 429 TUB Transcription Factor Family AT1G76900 69.742 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Ssu1g0025 Tub 5.5e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0025 K19600 - gmx:100814578 818.15