Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0023 ATGGAATGTATTGCATGGGTTGAAACCAGTCATGCTGATGGTGGTAGTGCAAATTGCATATACTGCTGTCAATGTGCTTTACAAGCTCGCCATAAACGACGGAATGAGTGTAAAGGTAGCTACAGCATACCGCCTCGCTTTGGATCTGCTTTCACTGTTCCTCTCGCTCTCATTTCTGAAAGGAAGAAAAGACCAAAGATGACTTGGAGGGTGCTTTTCATGGCATTTCTTTGTGGCTTATTCGGGGGAAGTTTATTTCAAAACCTTTTCTATGAGTCCTTGGCTTTAACATCAGCAACGTTTGCGTCCGCTATCTACAACCTCATTCCAGCCATCACCTTTGTTTTGGCCGTCTCCTGCGGTTTCGAAAGATTAAATTTGAGGGCAGCAGCAGGAAGGGCCAAGGTGTTGGGAACTATAATTGGAATTGGTGGGGCAATGTTGTTGACCTTTGTCAAAGGGGCAGAAATTAATATATGGCCCTTCCACATCAACCTTTTGCATCCACATCAGCACCAAAATAGCCACGTGGTACCATTAAATGCTGACTCTGGTCATAAATTGTTGGGGGCTCTTTGTGCCGTAGCAAGCTGTTTCTCTTTTGCTTTGTGGCTCACCATTCAGGCAAAGATGAGCAAAGAATACCCGTGCCACTACTCAAGCACAGCTCTGATGTCTACAGCAGGAGCAATACAAGCCACTGCTTTTGGTTTCTGTTTTGAGAGGGATTTGAGCCAATGGAAGTTGGGTTGGAATATTAGGCTACTAGCTGTGGCTTATTCGGGAATCGTGGCCTCTGGAATAGTGATTATTATTACTGCGTGGTGCATACAGATGAGAGGACCTCTGTTTGCGTCTGTTTTCAACCCTCTAATGCTTGTGCTTGTGGCTATTGCCGGTTCTTTGATGCTGAATGAGAACTTATATGTAGGAAGTGTGCTTGGAGCGGTGCTGATTGTGTGTGGCCTGTACATGGTTCTATGGGGTAAAAGTAAAGAGATGAAAAGTATTACTCAGTTAGTGCCATCAGAAACCATCCGAGAAGCTGAAGCCATAGAAGTTGTTGTCATGTCCACATCAGAAGATTATGATAAATGTGACCACAACAACCAAAGCGAAAGCACTACTAAAAGGAATGTTGACAAAGATTGTGAcgatttgtcaaaaaataaggaagaagATTATCTTCGCATATAG 1197 0.4302 MECIAWVETSHADGGSANCIYCCQCALQARHKRRNECKGSYSIPPRFGSAFTVPLALISERKKRPKMTWRVLFMAFLCGLFGGSLFQNLFYESLALTSATFASAIYNLIPAITFVLAVSCGFERLNLRAAAGRAKVLGTIIGIGGAMLLTFVKGAEINIWPFHINLLHPHQHQNSHVVPLNADSGHKLLGALCAVASCFSFALWLTIQAKMSKEYPCHYSSTALMSTAGAIQATAFGFCFERDLSQWKLGWNIRLLAVAYSGIVASGIVIIITAWCIQMRGPLFASVFNPLMLVLVAIAGSLMLNENLYVGSVLGAVLIVCGLYMVLWGKSKEMKSITQLVPSETIREAEAIEVVVMSTSEDYDKCDHNNQSESTTKRNVDKDCDDLSKNKEEDYLRI 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0023 398 PANTHER WAT1-RELATED PROTEIN 47 364 IPR030184 GO:0016021|GO:0022857
Ssu1g0023 398 MobiDBLite consensus disorder prediction 366 398 - -
Ssu1g0023 398 Pfam EamA-like transporter family 189 327 IPR000620 GO:0016020|GO:0016021
Ssu1g0023 398 Pfam EamA-like transporter family 47 150 IPR000620 GO:0016020|GO:0016021
Ssu1g0023 398 PANTHER WAT1-RELATED PROTEIN 47 364 - -
Ssu1g0023 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 246 332 - -
Ssu1g0023 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0023 Ssu-Chr1 1699933 1702137 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0023 47 384 Nodulin-like Gene Family AT1G25270 40.118 1.47e-80 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0023 - - gmx:100798755 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1981 5 57236708 57239348 Ssu1g0023 1 1699933 1702137 PCT
Ssu1g0023 1 1699933 1702137 Ssu5g1984 5 57380203 57389909 PCT