Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0022 CTGACTTGGAGGGTGATTTTCAAGTCATTTTTCTGTGGCCTATTTGGGGGAAGTTTATTCCAAAACCTTTATTTCGAGTCCTTGGCATTGATTTCAGCAACATTTGCTTCCGCTGTTTATAATCTCATTCCTGCCGTCACTTTTATCTTGGCCGTCTCTTGTGGTTtcgaaaaattaaattttcaaagggCAGCAGGCAAGGCTAAGGTGTTAGGAACGATAACAGGAGTTGGCGGGGCAATGATGCTGACCTTTCTCAAAGGtgtagaaattaatatttggaCCTTCCACATCAACCTTTTGCATAAAAAGGGTCCCACGGGAACTGAAAATGGTGACTCTGGTAGTAAATTGTTAGGGATTTTTTGTGGTCTTGGAAGCTGCTTCTGTTTTGCATTATGGCTCATCATTCAGGCTCAGATGAGCAAAGAATTCCCAAGCCATCACACAAGTGCCGCTTTGATGTCCTCAATGGGGGCAATTCAAGCCACTGTTTTTGCCCTATGTGTTGAGAAGGATTGGAGCCAATGGAGGTTGGGTTGGAGCATTAGGCTTCTAACTGCAGCATATTCGGGAATTGTGGCCTCTGGAATAATGGTTGTTGTCATTGCATGGTGTGTAAGGACGAGAGGCCCATTGTATGCCTCAGTTTTCAATCCTCTGATGCTGGTGCTTGTGGCCATTGCTGGTTCCTTGATGTTGGATGAGAACCTATACCTAGGAAGTGTAATTGGAGCAGTGCTAATTGTGATTGGATTGTACATGGTGCTGTGGGGTAAGagcaaagaaatgaaaaaagtgaCTCACTTAGAAACTACTCCAGAATTACAAGAAATTGAGGTTGTTGTCACGTCTACGGCAGCAGACCATGATAAATGCATATGCAGCAACGACAGCCACACCTGTAGCAAGAGCAATATTGTTTGCAAGGATCATGATAATGCATCAAAAAGTGAACTCGAAGGACAAGACAACGAAAATAATGGAAAAGAAGATATGGCTTCGAGTGAAGTCTCCAAGGTCTAA 1026 0.4152 LTWRVIFKSFFCGLFGGSLFQNLYFESLALISATFASAVYNLIPAVTFILAVSCGFEKLNFQRAAGKAKVLGTITGVGGAMMLTFLKGVEINIWTFHINLLHKKGPTGTENGDSGSKLLGIFCGLGSCFCFALWLIIQAQMSKEFPSHHTSAALMSSMGAIQATVFALCVEKDWSQWRLGWSIRLLTAAYSGIVASGIMVVVIAWCVRTRGPLYASVFNPLMLVLVAIAGSLMLDENLYLGSVIGAVLIVIGLYMVLWGKSKEMKKVTHLETTPELQEIEVVVTSTAADHDKCICSNDSHTCSKSNIVCKDHDNASKSELEGQDNENNGKEDMASSEVSKV 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0022 341 PANTHER WAT1-RELATED PROTEIN 1 283 - -
Ssu1g0022 341 MobiDBLite consensus disorder prediction 316 341 - -
Ssu1g0022 341 PANTHER WAT1-RELATED PROTEIN 1 283 IPR030184 GO:0016021|GO:0022857
Ssu1g0022 341 SUPERFAMILY Multidrug resistance efflux transporter EmrE 3 72 - -
Ssu1g0022 341 SUPERFAMILY Multidrug resistance efflux transporter EmrE 175 262 - -
Ssu1g0022 341 Pfam EamA-like transporter family 119 257 IPR000620 GO:0016020|GO:0016021
Ssu1g0022 341 Pfam EamA-like transporter family 2 82 IPR000620 GO:0016020|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0022 Ssu-Chr1 1665247 1667033 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0022 2 281 Nodulin-like Gene Family AT1G25270 40.493 3.79e-73 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0022 - - gmx:100809587 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1978 5 57154276 57160838 Ssu1g0022 1 1665247 1667033 PCT
Ssu1g0022 1 1665247 1667033 Ssu5g1981 5 57236708 57239348 PCT