Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0021 ATGAACTTGAGTGTGATTGTTGCTTACCGCTATGTTTTTGCAACCGCTTTCATTGCTCCACTTGctctgattattgaaagGAAGACGAGGACAAAGATGACTTGGACGATATTGTTTCAGGCTTTTCTATGCGGCTTAATTGGCGGAGCATTGCCTCAAAACTTAAACATGGAAGCGATTGCTTTAACTTCTGTAACGTTTACAACCGCCATATCCAACCTCATTCCAGCCATCACCTTTATCATATCCCTCTCCTTCGGATTGGAGAGATTATATTTAAGAACAGCAGCAGGGAAGGCCAAGATAATTGGAACGATAACTGGAATTAGTGGGGCAATGATACTGACTTTCGTTAAAGGCCCAGAAATTGAGATGCTGTCTTTCCACGTAAACCTTTTCAACCGCCGAAACGGCCATGTCGTTCATTCACACACTACTTCAGGCGTTATGACCATAATTGGTGCTCTCGCCTCTGTCGCAAGCAACGTCTCTTATGCTCTGTGGCTTATCATTCAGGCAAAGATGAGTGAAAGATACCCGTGTCCTTATTCGAGCACTGCATTGATGTCCCTAATGGGGGCACTGTTATCCCTTTCGTTTGCTTTTTGCGTTGAAAGGGATTTGAGCCAGTGGAGGTTGGGTTGGAATGTCAGACTGCTAACCGTGGCTTATGCGGGTATAGTGGTTTCTGGAGTGATGGTAGCCGTGATTTCGTGGTGTGTACGCACGAGAGGCCCATTGTTCGTCTCCGTCTTTAGCCCTCTAATGCTTGTGGTCGTGGCCTTTGCTGGATCCACGATTTTGGACGAGAAGCTATACCTTGGAAGCATCATTGGATCAATGTTGATTATTTGCGGATTATACGTGGTTCTATGGGGTAAAAGCAAAGAGACGAAGAAGAATCAATCTGTTCCATCAGAAAGCACCCATAAATCTGACACAGTTGAAATAATGATCAAATCTCGAGTAGAAGATAAAAGCAACAATAAGAGCAGTGCACTCGATAATGCTGTAAATGCGGTTGGGGGTAATGAAGATTCATGTGAAAACAATGTAACACATATACACTACAAGGCGTGA 1080 0.4352 MNLSVIVAYRYVFATAFIAPLALIIERKTRTKMTWTILFQAFLCGLIGGALPQNLNMEAIALTSVTFTTAISNLIPAITFIISLSFGLERLYLRTAAGKAKIIGTITGISGAMILTFVKGPEIEMLSFHVNLFNRRNGHVVHSHTTSGVMTIIGALASVASNVSYALWLIIQAKMSERYPCPYSSTALMSLMGALLSLSFAFCVERDLSQWRLGWNVRLLTVAYAGIVVSGVMVAVISWCVRTRGPLFVSVFSPLMLVVVAFAGSTILDEKLYLGSIIGSMLIICGLYVVLWGKSKETKKNQSVPSESTHKSDTVEIMIKSRVEDKSNNKSSALDNAVNAVGGNEDSCENNVTHIHYKA 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0021 359 PANTHER WAT1-RELATED PROTEIN 1 328 IPR030184 GO:0016021|GO:0022857
Ssu1g0021 359 Pfam EamA-like transporter family 153 291 IPR000620 GO:0016020|GO:0016021
Ssu1g0021 359 Pfam EamA-like transporter family 5 115 IPR000620 GO:0016020|GO:0016021
Ssu1g0021 359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 191 296 - -
Ssu1g0021 359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 9 107 - -
Ssu1g0021 359 PANTHER WAT1-RELATED PROTEIN 1 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0021 Ssu-Chr1 1611664 1618597 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0021 2 336 Nodulin-like Gene Family AT1G25270 43.881 2.67e-90 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0021 - - gmx:100810120 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0021 1 1611664 1618597 Ssu5g1978 5 57154276 57160838 PCT