Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0020 ATGAAAGATTTGTGCAATGTGGTGCAGGGGTTGAAGCCTGTGCTGTTAATGGTAGTGGTGCAAATAGCATTTGCTGGGGTCAATGTGTTCTACAAGCTTGCCGTAAACGATGGCATGAGCTTGAGGGTCGTTGTTGCCTACCGCTTTGTGTTCGCCACAGCTTTCACAGCTCCACTTGCTCTCATTGTTGAAAgGAAGAAGAGGACAAAGATGACTTGGACGGTACTGTTTCAGTCATTTCTTTGCGGCTTATTTGGGGGATCGTTAGCTCAAAATTTCTACTTACAAGCCCTGGCTTTAACTTCTGCAACGTTTGCATCCGCAACGTCTAACCTTCTACCAGGCATAACCTTTATCATGGCCGTTTCCTTCGGTTTGGAAAGATTAAATTTGAGATCAGTAGCAGGGAAGGCCAAAATAGTGGGTACATTAATTGGAATTGGTGGGGCAATGGTACTTACTTTCGTTAAAGGAGTGGACATCGAATTGGGGTCCTTCCACTTAAACCTTTTGCATACCCGAAACGGTGAGCACGCTCACGCTAGCGCCGGGGGTAAGACCGTCTTGGGTGCTCTATGCGCCCTGGCCAGTGGCATCAGCTATGCATTGTGGCTCATCATTCAGGCCAAGATGAGTGAAAGATACCCGAGTCATTACTCAAGCACGGCGTTGATGTCACTATGGGGGTCAGTACTGTCCATTGTGCTTGCACTTTGCCTTGAGAGGGACTGGAGTCAGTGGAGGTTGGGTTGGAATGTTAGGCTTTTGACTGTAGCCTATTCGGGTATTGTGGTCTCTGGGGTAATGGTAGTTGTAATTTCGTGGTGTATCCACATGAGAGGCCCATTGTTTGCCTCTGTTTTTAACCCCCTAATGCTTGTGATGGTGGCCTTGGCTGGTTCTACGATGTTAAACGAGAAGCTACACCTTGGATGCATCATTGGAGCAGTGCTGATTGTGTGTGGCTTATATGTGGTTTTATGGGGTAAAAGTaaagagatgaagaagaagaatcaaTTAGTGCCAGCACAAAGCCCCTGTGAGTCTAATACGGTCGAAATTGTCGTGAGGTCTGCACTAGAAGAtaaaaacaaccaaaacaaaacCCACGATAATGCTACAAAAGTAGTTAGGGATAACGACGATTCACGGGCAGATGGACACGAAGAGCATTGTTCACATGTACACAATCAGGGAAACgaaggaggagaagaagaataTTCTGATAATGCTTCAAATGCCTAA 1245 0.4434 MKDLCNVVQGLKPVLLMVVVQIAFAGVNVFYKLAVNDGMSLRVVVAYRFVFATAFTAPLALIVERKKRTKMTWTVLFQSFLCGLFGGSLAQNFYLQALALTSATFASATSNLLPGITFIMAVSFGLERLNLRSVAGKAKIVGTLIGIGGAMVLTFVKGVDIELGSFHLNLLHTRNGEHAHASAGGKTVLGALCALASGISYALWLIIQAKMSERYPSHYSSTALMSLWGSVLSIVLALCLERDWSQWRLGWNVRLLTVAYSGIVVSGVMVVVISWCIHMRGPLFASVFNPLMLVMVALAGSTMLNEKLHLGCIIGAVLIVCGLYVVLWGKSKEMKKKNQLVPAQSPCESNTVEIVVRSALEDKNNQNKTHDNATKVVRDNDDSRADGHEEHCSHVHNQGNEGGEEEYSDNASNA 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0020 414 SUPERFAMILY Multidrug resistance efflux transporter EmrE 234 332 - -
Ssu1g0020 414 MobiDBLite consensus disorder prediction 361 414 - -
Ssu1g0020 414 Pfam EamA-like transporter family 189 327 IPR000620 GO:0016020|GO:0016021
Ssu1g0020 414 Pfam EamA-like transporter family 12 152 IPR000620 GO:0016020|GO:0016021
Ssu1g0020 414 PANTHER WAT1-RELATED PROTEIN 12 365 - -
Ssu1g0020 414 MobiDBLite consensus disorder prediction 363 403 - -
Ssu1g0020 414 PANTHER WAT1-RELATED PROTEIN 12 365 IPR030184 GO:0016021|GO:0022857
Ssu1g0020 414 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0020 Ssu-Chr1 1542833 1547219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0020 1 336 Nodulin-like Gene Family AT1G68170 47.024 9.68e-101 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0020 - - gmx:100787839 653.284