Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0019 ATGGATCACCAAGCTGACACTAACAGGACTGATTTGATGACTATCACACGCTTTGTTCTGAGCGAACAGTCAAAGTATCCTGAATCACGTGGCGATTTCACGATCCTTCTCAGTCACATTGTTCTTGGCTGCAAATTCGTTTGTTCTGCTGTTAACAAGGCGGGACTGGCAAAACTCATAGGACTTGCTGGAGACACCAATGTTCAAGGTGAGGAGCAAAAGAAATTGGATGTGCTTTCAAATGAAGTATTTGTGAAAGCCTTAATCAGCAGCGGACGCACGTGCCTTCTTGTTTCTGAAGAGGTTGAAGAGGCTATATTTGTGCCATCATCACATCGTGGCAAATACATTGTTGTGTTTGATCCTTTGGATGGATCCTCAAACATTGACTGCGGGGTTTCTATTGGAACTATCTTTGGTATTTACATGGTAAAGAATGAGGCTAAAGTTACTCTTGAAGATGCATTGCAACCTGGGAACAAGTTGTTAGCAGCTGGTTACTGCATGTATGGAAGCTCTTGCACGTTCGTGCTTAGCACAGGAAATGGTGTGAATGCTTTTACACTTGATCCTTGCCTTGGGGAGTTCATATTGACTCACCAAACATCAAGGTACATACATTTGAAAGGAAAGATTTATTCCGTGAATGAAGGAAATGCCAAAAACTGGGATGAACCAACCACTAAATATGTACAAAAGTGCAAGTTTCCTCAAGATGGTTTACCACCAAAGTCTCTTAGGTACATCGGAAGTATGGTTGCTGATATCCATCGAACATTGCTTTATGGTGGTATCTTCATGTACCCTGCTGATATAAAGAGTCCAAACGGAAAGCTACGGCTTCTCTATGAAGTTTTTCCAATGTCATATTTGATGGAGCAAGCAGGAGGCCAGGCTTTCACAGGAAAACAACGGGCTCTTGACTTGgttccaaaaaaattacatgaacgATCACCAATATTCCTTGGCAGTTATGATGACATAGAGCAAATGAAGGAGCTTTATGCCGCATCCAAAGCAGATGGTGCATGA 1032 0.4147 MDHQADTNRTDLMTITRFVLSEQSKYPESRGDFTILLSHIVLGCKFVCSAVNKAGLAKLIGLAGDTNVQGEEQKKLDVLSNEVFVKALISSGRTCLLVSEEVEEAIFVPSSHRGKYIVVFDPLDGSSNIDCGVSIGTIFGIYMVKNEAKVTLEDALQPGNKLLAAGYCMYGSSCTFVLSTGNGVNAFTLDPCLGEFILTHQTSRYIHLKGKIYSVNEGNAKNWDEPTTKYVQKCKFPQDGLPPKSLRYIGSMVADIHRTLLYGGIFMYPADIKSPNGKLRLLYEVFPMSYLMEQAGGQAFTGKQRALDLVPKKLHERSPIFLGSYDDIEQMKELYAASKADGA 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0019 343 Hamap Fructose-1,6-bisphosphatase class 1 [fbp]. 13 337 IPR000146 GO:0005975|GO:0016791
Ssu1g0019 343 PRINTS Fructose-1,6-bisphosphatase signature 75 101 IPR028343 GO:0042132
Ssu1g0019 343 PRINTS Fructose-1,6-bisphosphatase signature 155 178 IPR028343 GO:0042132
Ssu1g0019 343 PRINTS Fructose-1,6-bisphosphatase signature 311 336 IPR028343 GO:0042132
Ssu1g0019 343 PRINTS Fructose-1,6-bisphosphatase signature 213 240 IPR028343 GO:0042132
Ssu1g0019 343 PRINTS Fructose-1,6-bisphosphatase signature 186 209 IPR028343 GO:0042132
Ssu1g0019 343 PRINTS Fructose-1,6-bisphosphatase signature 38 65 IPR028343 GO:0042132
Ssu1g0019 343 CDD FBPase 20 335 IPR000146 GO:0005975|GO:0016791
Ssu1g0019 343 Pfam Fructose-1-6-bisphosphatase, N-terminal domain 13 200 IPR033391 -
Ssu1g0019 343 SUPERFAMILY Carbohydrate phosphatase 8 335 - -
Ssu1g0019 343 Gene3D - 4 202 - -
Ssu1g0019 343 ProSitePatterns Fructose-1-6-bisphosphatase active site. 277 289 IPR020548 GO:0005975|GO:0042578
Ssu1g0019 343 PIRSF FBPtase 9 340 IPR028343 GO:0042132
Ssu1g0019 343 PIRSF FBPtase_SBPase 9 340 IPR000146 GO:0005975|GO:0016791
Ssu1g0019 343 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE-RELATED 2 342 IPR000146 GO:0005975|GO:0016791
Ssu1g0019 343 Gene3D - 205 342 - -
Ssu1g0019 343 Pfam Fructose-1-6-bisphosphatase, C-terminal domain 207 335 IPR044015 -
Ssu1g0019 343 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE, CYTOSOLIC-LIKE PROTEIN 2 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0019 Ssu-Chr1 1518468 1521317 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu1g0019 FBPase 4.7e-78 CL0171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0019 K03841 - gmx:100797157 639.417