LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g0018	ATGGCTGATGCCGAGGACATTCAACCTCTTGTTGTTGATAACGGAACTGGAATGGTCAAGGCTGGGTTTGCAGGTGATGATGCTCCTAGGGCTGTGTTCCCCAGTATTATTGGGCGACCGCGCCATACTGGGGTAATGGTTGGGATGGGTCAGAAGGATGCTTACGTGGGTGATGAAGCCCAGTCAAAAAGGGGTATACTCACCTTGAAGTATCCTATAGAGCATGGCATAGTCAGCAACTGGGATGATATGGAGAAGATTTGGCATCACACATTTTACAATGAGCTTCGTGTTGCCCCTGAAGAACATCCTGTACTTCTTACCGAGGCACCACTCAATCCCAAGGCCAACAGAGAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGTTATGCTCTTCCTCATGCAATTCTTCGATTGGACCTTGCTGGCCGTGATTTAACAGAGTACTTGGTGAAAATCCTAACTGAGAGAGGATACTCCTTCAGCACCTCTGCTGAAAAGGAAATTGTCCGTGATGTGAAAGAGAAATTGGCATATGTGGCCCTTGATTTTGAACAAGAAATGGAGACTACTAAGAGTAGTTCTGCAGTGGAGAAGAGCTATGAATTGCCTGATGGACAGGTCATTACAATAGGTTCTGAAAGATTCCGTTGCCCAGAAGTGCTCTTCCAGCCTTCTCTGATTGGTATGGAAGCTACTGGAATTCATGAAACAACGTACAACTCCATCATGAAATGTGATGTTGATATTAGGAAGGATCTGTATGGAAACATCGTACTTAGTGGAGGATCTACCATGTTTCCGGGAATTGCTGATCGTATGAGCAAGGAAATTAGTGCTCTTGCACCAAGCAGCATGAAAATCAAGGTGGTTGCACCTCCCGAGAGAAAATACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCACTTAGCACGTTTCAACAGATGTGGATCTCTAAGGGTGAATATGATGAATCTGGGCCAGCTATTGTTCACCGGAAGTGCTTCTAA	1134	0.4541	MADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYLVKILTERGYSFSTSAEKEIVRDVKEKLAYVALDFEQEMETTKSSSAVEKSYELPDGQVITIGSERFRCPEVLFQPSLIGMEATGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF	377

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu1g0018	377	ProSitePatterns	Actins signature 2.	358	366	IPR004001	-
	Ssu1g0018	377	Gene3D	Actin; Chain A, domain 4	182	273	-	-
	Ssu1g0018	377	PANTHER	ACTIN	1	376	IPR004000	-
	Ssu1g0018	377	SUPERFAMILY	Actin-like ATPase domain	149	377	IPR043129	-
	Ssu1g0018	377	PANTHER	ACTIN	1	376	-	-
	Ssu1g0018	377	Pfam	Actin	5	377	IPR004000	-
	Ssu1g0018	377	ProSitePatterns	Actins signature 1.	55	65	IPR004001	-
	Ssu1g0018	377	Gene3D	-	10	371	-	-
	Ssu1g0018	377	CDD	NBD_sugar-kinase_HSP70_actin	10	183	-	-
	Ssu1g0018	377	SUPERFAMILY	Actin-like ATPase domain	6	155	IPR043129	-
	Ssu1g0018	377	Gene3D	-	140	340	-	-
	Ssu1g0018	377	PRINTS	Actin signature	28	37	IPR004000	-
	Ssu1g0018	377	PRINTS	Actin signature	51	62	IPR004000	-
	Ssu1g0018	377	PRINTS	Actin signature	63	85	IPR004000	-
	Ssu1g0018	377	PRINTS	Actin signature	117	130	IPR004000	-
	Ssu1g0018	377	PRINTS	Actin signature	142	161	IPR004000	-
	Ssu1g0018	377	PRINTS	Actin signature	238	254	IPR004000	-
	Ssu1g0018	377	SMART	actin_3	7	377	IPR004000	-
	Ssu1g0018	377	ProSitePatterns	Actins and actin-related proteins signature.	106	118	IPR020902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g0018	Ssu-Chr1	1511657	1513373	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu1g0018	1	377	Cytoskeleton Gene Families	AT3G12110	94.164	0.0	751

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g0018	K10355		-	gmx:100778206	754.592