Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0011 ATGGTGCCCTTTGTTTTGTCTCTCTTGTTCTTCTCATTCTTAATGGGGAGTTCTGAGGGTCACCTTCAAGTGGGTTTCTACTCCAGCACATGTCCTCAAGTAGAGTCCATTGTCCACGCCGCTGTTAGAGACGCTGTTCTCTCTGACCCCAATATGGCTGCTGTCTTACTCAGACTTCATTTTCATGACTGCTTTGTTGAGGGATGTGATGGTTCAATTCTGATCGACAATGGTCCACAATCGGAGAAACATGCATTTGGTCATCAAGGGGTTAGAGGGTttgatgtgatagaaagagCCAAGGCACAATTGGAAGTGTCTTGCCCTGGCGTGGTTTCTTGTGCAGACATAGTGGCATTGGCAGCCAGAGACGCTATAGTCATGGCAAATGGGCCAGCATATCAAGTTCCAACAGGGCGGAGAGATGGGTTGGTTTCCAATCTTTCGTTAGCAGATGATATGCCAGATGTTAGTGATTCAATTCAGCTACTCAAGGCcaagtttctgaacaagggccTTACAGTGAAAGACCTTGTTCTTCTCAGtgGTGCACATACAATTGGAACCACAGCGTGCTTCTTTATGACGAGAAGATTGTACAACTTTTTCCCTGGGGGTGGGGGATCAGACCCAGCTATCAGTCCAAACTTCCTCCCACAGCTAAAGGCAAGGTGCCCTCAGAATGGAGATATTAATGCTCGCCTAGCCATTGACGAAGGGAGTGAGCAGAAATTTGACATAAACATTCTAAAGAACATAAGGGAAGGTTTTGCTGTGCTAGAATCTGATGCCAGGCTCAACGATGACATAGCCACCAAGAATGTCATTGACTCCTACTTTTCTCCCTTTGGTCCATTGTTCGGACCTTCTTTTGAAGCTGATTTTCTTGAGTCAGTTGTGAAGATGGGCCGAATTGGTGTCAAGACAGATTTCCTTGGAGAGGTTAGGCGTGTGTGCTCAGCATTCAATTGA 972 0.4444 MVPFVLSLLFFSFLMGSSEGHLQVGFYSSTCPQVESIVHAAVRDAVLSDPNMAAVLLRLHFHDCFVEGCDGSILIDNGPQSEKHAFGHQGVRGFDVIERAKAQLEVSCPGVVSCADIVALAARDAIVMANGPAYQVPTGRRDGLVSNLSLADDMPDVSDSIQLLKAKFLNKGLTVKDLVLLSGAHTIGTTACFFMTRRLYNFFPGGGGSDPAISPNFLPQLKARCPQNGDINARLAIDEGSEQKFDINILKNIREGFAVLESDARLNDDIATKNVIDSYFSPFGPLFGPSFEADFLESVVKMGRIGVKTDFLGEVRRVCSAFN 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0011 323 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601
Ssu1g0011 323 Gene3D - 25 323 - -
Ssu1g0011 323 SUPERFAMILY Heme-dependent peroxidases 22 323 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu1g0011 323 PRINTS Plant peroxidase signature 176 188 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0011 323 PRINTS Plant peroxidase signature 92 105 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0011 323 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0011 323 PRINTS Plant peroxidase signature 130 145 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0011 323 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0011 323 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0011 323 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0011 323 PRINTS Plant peroxidase signature 111 121 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0011 323 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0011 323 PANTHER PEROXIDASE 8 321 - -
Ssu1g0011 323 ProSitePatterns Peroxidases proximal heme-ligand signature. 177 187 IPR019793 -
Ssu1g0011 323 Gene3D Peroxidase, domain 2 155 302 - -
Ssu1g0011 323 CDD secretory_peroxidase 21 322 IPR033905 GO:0004601|GO:0042744
Ssu1g0011 323 ProSiteProfiles Plant heme peroxidase family profile. 21 323 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0011 323 PANTHER PEROXIDASE 25-RELATED 8 321 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0011 323 Pfam Peroxidase 39 279 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0011 323 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0011 323 PRINTS Haem peroxidase superfamily signature 130 142 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0011 323 PRINTS Haem peroxidase superfamily signature 177 192 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0011 323 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0011 323 PRINTS Haem peroxidase superfamily signature 112 129 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0011 Ssu-Chr1 1084980 1087982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0011 2 323 Peroxidase AT1G77100 54.938 3.04e-115 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0011 K00430 - gmx:547549 575.474