LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g0011	ATGGTGCCCTTTGTTTTGTCTCTCTTGTTCTTCTCATTCTTAATGGGGAGTTCTGAGGGTCACCTTCAAGTGGGTTTCTACTCCAGCACATGTCCTCAAGTAGAGTCCATTGTCCACGCCGCTGTTAGAGACGCTGTTCTCTCTGACCCCAATATGGCTGCTGTCTTACTCAGACTTCATTTTCATGACTGCTTTGTTGAGGGATGTGATGGTTCAATTCTGATCGACAATGGTCCACAATCGGAGAAACATGCATTTGGTCATCAAGGGGTTAGAGGGTttgatgtgatagaaagagCCAAGGCACAATTGGAAGTGTCTTGCCCTGGCGTGGTTTCTTGTGCAGACATAGTGGCATTGGCAGCCAGAGACGCTATAGTCATGGCAAATGGGCCAGCATATCAAGTTCCAACAGGGCGGAGAGATGGGTTGGTTTCCAATCTTTCGTTAGCAGATGATATGCCAGATGTTAGTGATTCAATTCAGCTACTCAAGGCcaagtttctgaacaagggccTTACAGTGAAAGACCTTGTTCTTCTCAGtgGTGCACATACAATTGGAACCACAGCGTGCTTCTTTATGACGAGAAGATTGTACAACTTTTTCCCTGGGGGTGGGGGATCAGACCCAGCTATCAGTCCAAACTTCCTCCCACAGCTAAAGGCAAGGTGCCCTCAGAATGGAGATATTAATGCTCGCCTAGCCATTGACGAAGGGAGTGAGCAGAAATTTGACATAAACATTCTAAAGAACATAAGGGAAGGTTTTGCTGTGCTAGAATCTGATGCCAGGCTCAACGATGACATAGCCACCAAGAATGTCATTGACTCCTACTTTTCTCCCTTTGGTCCATTGTTCGGACCTTCTTTTGAAGCTGATTTTCTTGAGTCAGTTGTGAAGATGGGCCGAATTGGTGTCAAGACAGATTTCCTTGGAGAGGTTAGGCGTGTGTGCTCAGCATTCAATTGA	972	0.4444	MVPFVLSLLFFSFLMGSSEGHLQVGFYSSTCPQVESIVHAAVRDAVLSDPNMAAVLLRLHFHDCFVEGCDGSILIDNGPQSEKHAFGHQGVRGFDVIERAKAQLEVSCPGVVSCADIVALAARDAIVMANGPAYQVPTGRRDGLVSNLSLADDMPDVSDSIQLLKAKFLNKGLTVKDLVLLSGAHTIGTTACFFMTRRLYNFFPGGGGSDPAISPNFLPQLKARCPQNGDINARLAIDEGSEQKFDINILKNIREGFAVLESDARLNDDIATKNVIDSYFSPFGPLFGPSFEADFLESVVKMGRIGVKTDFLGEVRRVCSAFN	323

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu1g0011	323	ProSitePatterns	Peroxidases active site signature.	53	64	IPR019794	GO:0004601
	Ssu1g0011	323	Gene3D	-	25	323	-	-
	Ssu1g0011	323	SUPERFAMILY	Heme-dependent peroxidases	22	323	IPR010255	GO:0004601\|GO:0006979\|GO:0020037
	Ssu1g0011	323	PRINTS	Plant peroxidase signature	176	188	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Ssu1g0011	323	PRINTS	Plant peroxidase signature	92	105	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Ssu1g0011	323	PRINTS	Plant peroxidase signature	236	251	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Ssu1g0011	323	PRINTS	Plant peroxidase signature	130	145	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Ssu1g0011	323	PRINTS	Plant peroxidase signature	55	75	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Ssu1g0011	323	PRINTS	Plant peroxidase signature	297	310	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Ssu1g0011	323	PRINTS	Plant peroxidase signature	252	269	IPR000823	GO:0004601\|GO:0006979\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g0011	Ssu-Chr1	1084980	1087982	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu1g0011	2	323	Peroxidase	AT1G77100	54.938	3.04e-115	334

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g0011	K00430		-	gmx:547549	575.474

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