Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0010 ATGAACGATTCTCAAAGGCCACAATGGCTTCGCAAATCTGTCTGGAAAGCAAATGATGGGGTGATCGTAATTACGTCACTCATGGTGGGTATTGGAGCGGCCAATGAAAACATCTTGTCCATGATTTTGGGTGGGTTTTCAGGAATAGTTGCTGGGGTATTTATCACAGCAATTGGAGAATTTATCTCTATGTCCAATGAGTATGACGTAGAGATAACTGGAATGGAAAGAGACTCATAA 240 0.4167 MNDSQRPQWLRKSVWKANDGVIVITSLMVGIGAANENILSMILGGFSGIVAGVFITAIGEFISMSNEYDVEITGMERDS 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0010 79 Pfam VIT family 10 72 IPR008217 GO:0005384|GO:0030026
Ssu1g0010 79 PANTHER VACUOLAR IRON TRANSPORTER-LIKE PROTEIN 4 78 - -
Ssu1g0010 79 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 4 78 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0010 Ssu-Chr1 996378 996617 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0010 4 79 Nodulin-like Gene Family AT1G76800 52.632 7.16e-25 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0010 K22736 - gmx:100817158 91.2781