Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0008 atgaacGATTCTCAAAGGCCACAATGGCTTCTCAAAGCTGTTTGCTGGAAAGTAAATGATAAGGTGATAGCAATTGCGTCACTCATGATGTGTATTGCAGCAGCCAGTGAAAACATCTTGACCATGGTTTTGGGGGGGTTTTTAGGAATAATTGCTGGCGTATTTACCACAACCATTGAAGAATTTATCTCTATGTCCAATGACTATGATATAGAGATAGCTGAAATGGAAAGAGACTTACAAAGAAATATCgatgaagaagagaaaatgtCAAGTCCATTTAAGATAGCTTTAGCATTAGCATTTGTATTTTCTATAGGTGTCATGCTACCATTGCTAGCAGCTTATTTCAGATGGGAATATAAAATGAGGATGGTTGCTATAATTGGTGTGTCTAGCCTAGCATTATTGCTATTTGGGGGGGAAGGAGCTAGGCTTGAAAAAATTTCGGTGAGAAAATCTTGTATGAAAGTTCTCATAGGAGGTTGGGTGACTATGGCCGTAACATTTGGCCTCACccaattatttagttttatagaACGTTAA 546 0.3571 MNDSQRPQWLLKAVCWKVNDKVIAIASLMMCIAAASENILTMVLGGFLGIIAGVFTTTIEEFISMSNDYDIEIAEMERDLQRNIDEEEKMSSPFKIALALAFVFSIGVMLPLLAAYFRWEYKMRMVAIIGVSSLALLLFGGEGARLEKISVRKSCMKVLIGGWVTMAVTFGLTQLFSFIER 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0008 181 Pfam VIT family 76 173 IPR008217 GO:0005384|GO:0030026
Ssu1g0008 181 PANTHER VACUOLAR IRON TRANSPORTER-LIKE PROTEIN 4 176 - -
Ssu1g0008 181 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 4 176 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0008 Ssu-Chr1 946563 947108 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0008 4 175 Nodulin-like Gene Family AT3G43660 45.930 2.21e-46 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0008 K22736 - gmx:100817158 173.326