Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g03138 ATGTGTGGAGGAGCTATTATCTCTGACTTCATTCCGGCGGCGGTCGCGGCTAAGTCTCGCCGGCTCACCGCCGATTACCTATGGCCGGATTTGAAGAAGCAGACGTCAGAGGTCATCCACTTGGACGATGACTTCGAGGCTGATTTTAGGGAATTCAAGGACGACTCCGACATCGACGACGACCACCAAGTCAAACCCTTTTCTTTCTCCGCCTCTTCTCCTCGACCTTCGGCAGTGAATTCTGTGGCATTCAAAGGTCGAGCTGAGAAGTCTGCAAAGAGAAAGAGGAAGAATCAATATAGGGGAATTCGTCAACGTCCTTGGGGAAAATGGGCGGCTGAGATCAGGGATCCAAGAAAGGGCGTTCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCCGAAGCGCGGAAGATTCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGAGGAAGCTTCTGTGAAACGTTCTGACCTAAATCCACAGGGAAAGCACAAGACTGTTCAATCCAATGTCCACAAGTTCAATGCTGGTAACAATCAGAAGGACCTTTGTTGTCCTATGGATCTGGTGGAACAGAAACCACTACTTAACCAGTTTGCTAACATGGGGTCCTTCCCTGGCAGTGGAAATGGGCTCAGTTCCCTTCCTTCGTCTGATGATGTGACCCTTTTCTTCAGTTCCGATCAGGGAAGTAATTCATTTGATTATTCTGATCTTGGGTGGGGTGAACAGGCCCCTAAAACTCCTGAGATCTCATCCATGCTTTCTGCTCCTTTGGATTGTGATTCTCATATAATACAGGATGCCAACCAGCAGACTAACTCTCAGGATGTGGTATCTATGCAAGATGATTCTGCCAAGACACTGTCTGAGGAGCTTGTGGATATTGAATCTGAGTTGAACTTCTTTCAGATGCCTTATCTTGAAGGGTGGGATGATACTTCATTGGAATCTTTGCTATCTTGTAACACAACCCAGGATGGTGGAAACCTGATGAACTTTTGGAGCTTTGATGACATTACTAAAATGGCTGGCGGAGTTTTCTAA 1071 0.4725 MCGGAIISDFIPAAVAAKSRRLTADYLWPDLKKQTSEVIHLDDDFEADFREFKDDSDIDDDHQVKPFSFSASSPRPSAVNSVAFKGRAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARKIRGKKAKVNFPEEASVKRSDLNPQGKHKTVQSNVHKFNAGNNQKDLCCPMDLVEQKPLLNQFANMGSFPGSGNGLSSLPSSDDVTLFFSSDQGSNSFDYSDLGWGEQAPKTPEISSMLSAPLDCDSHIIQDANQQTNSQDVVSMQDDSAKTLSEELVDIESELNFFQMPYLEGWDDTSLESLLSCNTTQDGGNLMNFWSFDDITKMAGGVF 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g03138 356 SMART rav1_2 99 162 IPR001471 GO:0003700|GO:0006355
Spst9g03138 356 SUPERFAMILY DNA-binding domain 99 157 IPR016177 GO:0003677
Spst9g03138 356 Gene3D AP2/ERF domain 98 158 IPR036955 GO:0003700|GO:0006355
Spst9g03138 356 FunFam Ethylene-responsive transcription factor 2 98 157 - -
Spst9g03138 356 ProSiteProfiles AP2/ERF domain profile. 99 156 IPR001471 GO:0003700|GO:0006355
Spst9g03138 356 PRINTS Ethylene responsive element binding protein signature 100 111 IPR001471 GO:0003700|GO:0006355
Spst9g03138 356 PRINTS Ethylene responsive element binding protein signature 122 138 IPR001471 GO:0003700|GO:0006355
Spst9g03138 356 PANTHER DNA-BINDING DOMAIN 74 271 IPR044808 GO:0003700|GO:0009873
Spst9g03138 356 CDD AP2 99 157 IPR001471 GO:0003700|GO:0006355
Spst9g03138 356 Pfam AP2 domain 99 148 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g03138 Spst-Chr9 65007737 65009570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g03138 1 356 AP2-EREBP Transcription Factor Family AT1G53910 44.612 2.82e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst9g03138 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g03138 K09286 - gmx:100170723 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g03138 9 65007737 65009570 Spst9g03138 9 65007737 65009570 ECH
Spst3g03012 3 79785473 79786597 Spst9g03138 9 65007737 65009570 PCT