Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g03130 ATGGGTGACTCCTCCCCTCCAACTGACACTCTGGGTGAATCCCCCGCCGTGGCTTTGATCGGAAAAATAATGATAATCGTTATAGTGATGTTGTTCTTCCTTGTTGTATTTGCTCTCGGCCTTCATCTCTTCAGTAGAAACTTCTGGTGGCGCAACCCTGCTCCCCAATCACACCGCCGCCGCCGCCGCTTTGTGTTTTCCACCGGTCAAGAGGGTGGTCTTCGAAGCGGACTGGATCCCTCCGTGCTGAACTCCATACCCGTGTTGGTATTCCAAGCCCAAGACTTCAAGGATGGTTTGGAATGCGCGGTTTGCCTCTCGGAGGTCGTGGAAGGAGAAAAGGCCAGGCTTTTGCCTAAATGCAATCATGGGTTTCATGTTGGTTGTATTGACATGTGGTTCCAGTCCCATTCTACCTGCCCTCTTTGCAGGAACTCTGTTGCTGCTCAAGCCGATGAAAATATTGATGCACAAAACTCAGAATCAGAGTCTCCAACTTTTCCCACAAACGTCTTGGTTTGGGGGGATCAAACTCAAATAAGTTCTACCGGTGGTGCTTCTTCAGAGGAAGTTGCTTCTCAGACACCTTGCCCCTCCTCATCTTCTGCCGCTCCTACTTCTGGTGATGATAACAACAATAACAATAATAGCAGACGACATGGAACGTTGGTGATTGACATACCAAGTGATATGACTCCAACTTCTTTGTCGCCTTCTGCAAGCAGGTTTGCTGAAGATGACTTGAAATCGCCAATGACTGGAAGACTGAGGTCATTGAAGAGGCTTTTGAGCAGGGACAGAAGGCTAAATCCTTGGAGTCCTACTTCTGGGGATGTAGAACTAGCAGCTAATTCAGGGTGA 861 0.4866 MGDSSPPTDTLGESPAVALIGKIMIIVIVMLFFLVVFALGLHLFSRNFWWRNPAPQSHRRRRRFVFSTGQEGGLRSGLDPSVLNSIPVLVFQAQDFKDGLECAVCLSEVVEGEKARLLPKCNHGFHVGCIDMWFQSHSTCPLCRNSVAAQADENIDAQNSESESPTFPTNVLVWGDQTQISSTGGASSEEVASQTPCPSSSSAAPTSGDDNNNNNNSRRHGTLVIDIPSDMTPTSLSPSASRFAEDDLKSPMTGRLRSLKRLLSRDRRLNPWSPTSGDVELAANSG 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g03130 286 SMART ring_2 102 143 IPR001841 -
Spst9g03130 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 154 IPR013083 -
Spst9g03130 286 MobiDBLite consensus disorder prediction 265 286 - -
Spst9g03130 286 SUPERFAMILY RING/U-box 82 150 - -
Spst9g03130 286 CDD RING-H2_EL5-like 101 144 - -
Spst9g03130 286 Pfam Ring finger domain 101 144 IPR001841 -
Spst9g03130 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 13 182 - -
Spst9g03130 286 MobiDBLite consensus disorder prediction 180 241 - -
Spst9g03130 286 FunFam RING-H2 finger protein ATL3 70 149 - -
Spst9g03130 286 MobiDBLite consensus disorder prediction 180 252 - -
Spst9g03130 286 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g03130 Spst-Chr9 64967159 64968019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g03130 20 270 C3H Transcription Factor Family AT1G53820 43.813 1.32e-63 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g03130 - - gmx:100797420 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g03130 9 64967159 64968019 Spst9g03130 9 64967159 64968019 ECH
Spst3g03021 3 79858660 79859397 Spst9g03130 9 64967159 64968019 PCT