Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g03123 ATGACACGGGGAGCTCCCAGTTCCAGACAAAGACCAGCCCCATCAACATCAACACGACCCTCTTCCATCTACATGATTTCCAATTTAATGGTCTTTGTCACTGTACTGTTGCTTCTGTCTGAGTTTCTTGTTCTCGGTCAAGCCTCCTCGTGTAACCAACTGGACAGAGACTCTCTCTTGGCCTTCGGAAGGAATATATCCACTTCTTCTCCTCTCAATTGGGCTGCCTCTGTTGATTGTTGTCTGTGGGAAGGCATTGAGTGTGATGCGAATTTCAGAGTCTTACATCTGTTGCTACCATCCAGGGGTCTCGCTGGCTTTATCTTCCCATCTCTCTCCAATCTCACTGCTCTCTCCCGGCTTGATCTCTCCCATAACCGCTTATCTGGTAATCTTCCAGACCAAATTTTCTCACTTCTTAATCACCTGCAGATTCTTGATTTAAGCTTCAATCGTCTCTCTGGCGAATTGCCACCCTTTGTTGCTAATACCAGTGGCTATACTATCCGGGAGATTGATTTGTCTAGTAATTTATTCCACGGAAAGCTCCCACCTTCCCTCCTTCAGCACCTGGCAGACGCAGTCGCAGGAGGGAGTTTGACATCTTTTAATGTTAGTAACAACAGCTTCACGGGTCAAATTCCCACTTCTGTCCTCTGCAGCAACCACAGCAGCTCCTCCTCTCTCAGATTCTTGGATTATTCCTCCAATGATTTCGCTGGCATGATTCAGCCAGGACTAGGAGCATGTTCCAAGTTGGAGAGATTTCGAGCAGGTTCCAATTCACTATCCGGGCCCCTTCCTGGTGATATTTTTTATGCTGTTTCTCTCCAAGAAATATCCTTGCCCCTCAATAAACTCAGTGGAACCATTGGTGAGGGCATTGTTAACCTTGCCAACCTCACGGTTTTGGAGCTCTACTCCAATAATTTCACCGGGCCCATTCCCTCGGATATTGGTAAGCTCTCCAAATTGGAACGTTTGGTCCTTCATGCCAACCAACTAAATGGCACTCTGCCCCCATCTCTAATGGACTGTGTCAATCTTGTCATGTTGGATGTAAGGGTCAACTCTTTGGAGGGAAACCTCTCAGCATTGAATTTCTCCGGACTCCTCAGACTCACAGCACTTGACCTTGGCAACAACAGTTTTACTGGTATTATACCACCAACTATGTATGCCTGTAAATCACTTAAAGCAGTAAGGCTAGCATCTAATCAGTTTGAGGGACAGATCTCACCCGATGTACTTGGACTTCAGTCTCTGGCTTTCCTATCAGTTTCTACCAACAACCTGAGTAATGTCACTGGGGCTCTGAGGTTGCTTATGGAACTCAAAAACCTTAGCACCCTTATGCTCTCCCAGAATTTTTTCAATGAAATGATGCCAGATGATGTGAACATAACAAATCCAGATGGATTTCAAAAGATCCAAGTTCTGGGTTTGGGCGGTTGTAATTTCACAGGCCAAATACCACGTTGGCTTTATAATCTGAAGAAGCTCGAGGCCTTGGATTTGTCCTACAATCAAATCAGTGGTTCAATTCCTCCTTGGTTGTACACACTTCCTGAGCTTTTCTACATAGACTTGTCTTTCAACCGCCTCACAGGAATATTTCCGGTTGAGCTCACAACGCTTCCAGCACTTACATCACAACGGACCTATGACGGAGTAGAAAGGACATACCTGGAGTTACCCGTATTTGCTAATGCCAACAATGTTTCTCAGATGCAATATAATCAGATTTCCAACCTACCACCAGCAATATATCTGGGAAACAATAACCTCAATGGCAGTATTCCTGTGGGGATTGGCCAACTGAAAGTCCTTCATCAGCTGGACCTTAGTAACAACAACTTCTCTGGCAGTATCCCAGCGGAAATTTCTAACTTGATTAACTTGGAGAAACTGTACCTCCAAGGAAACCAACTTTCCGGTGAAATTCCTGCTTCACTCAAAATCTTGCATTTTTTGTCTGCTTTCAGTGTAGCATATAATAATCTTCAAGGACCGATACCCGCTGGTGGTCAATTTGATACTTTCTCTTTTTCCAGCTTTGAAGGCAACCCACAGTTGTGTGGTTCAGTTGTTCAGCGCTCTTGTCTTCCTCAACAGGGTGCTACTGCACGTGGTCACAGCTCAAACAAAAAATTGAAAATTGGATTTTCCATTGCTGCCAGTTTTGGTATTGTTTCCTTCGTTTCAGTGTTGATAGTGTGGGTAATATCCAAGAGGAGGATCAATCCAGGTGGAGACCCTGACAAGATTGAACTAGAATCAATTTCTGTCAACTCTTACAGTGGGGTTCATCCTGAGGTTGACAAAGATGCTAGCCTAGTGGTGCTGTTCCCTAATAAAACAAATGAAATCAAGGACCTTACCATATTTGAAATATTAAAAGCCACTGAAAATTTCAGTCAGGCAAACATAATAGGATGTGGGGGTTTCGGTTTGGTTTATAAAGCAACATTACCAAATGGAACTGCTCTGGCCATCAAGAAACTTTCAGGAGATTTGGGTCTTATGGAAAGGGAATTCAAAGCAGAGGTAGAGGCTTTGTCGACAGCACAGCATGAAAATCTGGTTGCATTGCAAGGCTATTGTGTGCATGAGGGCGTTCGGCTTCTCATATACACTTACATGGAAAATGGAAGTCTGGATTACTGGCTGCATGAAAAGGCCGATGGTCCATCTCAACTTGATTGGCCTACTCGCCTGAAGATTGCACAAGGTGCAAGTTGTGGATTGGCTTACATGCATCAAATATGTGAACCACATATAGTGCATCGTGATATAAAGTCAAGCAATATACTTCTTGATGAAAAGTTTGAGGCACATGTTGCTGATTTTGGGCTGGCTCGACTGATTCTTCCTTATCATACTCATGTTACAACTGAACTTGTAGGTACATTAGGTTACATACCCCCAGAGTACGGACAAGCATGGGTGGCAACTTTTAGAGGAGATGTGTACAGCTTTGGGGTTGTCATGCTTGAGCTGCTTACTGGGAGGAGGCCTGTCGATGTAAGCAAGCCAAAGATGTCAAGGGAGTTAGTTGTCTGGGTTCAACAAATGAGGAGTGAAGGAAAACAAGATCAAGTCTTTGATACACATATGAGAGGCAAGGGCTTTGAAGAAGAGATGCAGCAGGTTCTTGATGTAGCCTGCATGTGTGTAAACCAGAATCCTTTCAAGAGACCAAACATCAGAGAAGTTGTTGAATGGCTGAGGAATGTAAGATCATCCAACCAGCAAATGAACAAAGATTAG 3270 0.4407 MTRGAPSSRQRPAPSTSTRPSSIYMISNLMVFVTVLLLLSEFLVLGQASSCNQLDRDSLLAFGRNISTSSPLNWAASVDCCLWEGIECDANFRVLHLLLPSRGLAGFIFPSLSNLTALSRLDLSHNRLSGNLPDQIFSLLNHLQILDLSFNRLSGELPPFVANTSGYTIREIDLSSNLFHGKLPPSLLQHLADAVAGGSLTSFNVSNNSFTGQIPTSVLCSNHSSSSSLRFLDYSSNDFAGMIQPGLGACSKLERFRAGSNSLSGPLPGDIFYAVSLQEISLPLNKLSGTIGEGIVNLANLTVLELYSNNFTGPIPSDIGKLSKLERLVLHANQLNGTLPPSLMDCVNLVMLDVRVNSLEGNLSALNFSGLLRLTALDLGNNSFTGIIPPTMYACKSLKAVRLASNQFEGQISPDVLGLQSLAFLSVSTNNLSNVTGALRLLMELKNLSTLMLSQNFFNEMMPDDVNITNPDGFQKIQVLGLGGCNFTGQIPRWLYNLKKLEALDLSYNQISGSIPPWLYTLPELFYIDLSFNRLTGIFPVELTTLPALTSQRTYDGVERTYLELPVFANANNVSQMQYNQISNLPPAIYLGNNNLNGSIPVGIGQLKVLHQLDLSNNNFSGSIPAEISNLINLEKLYLQGNQLSGEIPASLKILHFLSAFSVAYNNLQGPIPAGGQFDTFSFSSFEGNPQLCGSVVQRSCLPQQGATARGHSSNKKLKIGFSIAASFGIVSFVSVLIVWVISKRRINPGGDPDKIELESISVNSYSGVHPEVDKDASLVVLFPNKTNEIKDLTIFEILKATENFSQANIIGCGGFGLVYKATLPNGTALAIKKLSGDLGLMEREFKAEVEALSTAQHENLVALQGYCVHEGVRLLIYTYMENGSLDYWLHEKADGPSQLDWPTRLKIAQGASCGLAYMHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLARLILPYHTHVTTELVGTLGYIPPEYGQAWVATFRGDVYSFGVVMLELLTGRRPVDVSKPKMSRELVVWVQQMRSEGKQDQVFDTHMRGKGFEEEMQQVLDVACMCVNQNPFKRPNIREVVEWLRNVRSSNQQMNKD 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g03123 1089 SMART serkin_6 805 1076 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g03123 1089 Gene3D Ribonuclease Inhibitor 437 708 IPR032675 -
Spst9g03123 1089 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 268 363 - -
Spst9g03123 1089 PRINTS Leucine-rich repeat signature 118 131 - -
Spst9g03123 1089 PRINTS Leucine-rich repeat signature 498 511 - -
Spst9g03123 1089 Pfam Leucine Rich Repeat 633 653 IPR001611 GO:0005515
Spst9g03123 1089 SUPERFAMILY L domain-like 59 316 - -
Spst9g03123 1089 FunFam Leucine-rich repeat receptor-like protein kinase 881 1087 - -
Spst9g03123 1089 FunFam Leucine-rich repeat receptor protein kinase MSP1 774 880 - -
Spst9g03123 1089 SUPERFAMILY Protein kinase-like (PK-like) 789 1076 IPR011009 -
Spst9g03123 1089 Pfam Leucine rich repeat N-terminal domain 55 89 IPR013210 -
Spst9g03123 1089 ProSitePatterns Serine/Threonine protein kinases active-site signature. 927 939 IPR008271 GO:0004672|GO:0006468
Spst9g03123 1089 SUPERFAMILY L domain-like 231 690 - -
Spst9g03123 1089 Pfam Protein kinase domain 806 1074 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g03123 1089 Gene3D Transferase(Phosphotransferase) domain 1 881 1089 - -
Spst9g03123 1089 Gene3D Ribonuclease Inhibitor 54 167 IPR032675 -
Spst9g03123 1089 Gene3D Ribonuclease Inhibitor 168 219 IPR032675 -
Spst9g03123 1089 Pfam Leucine rich repeat 476 535 IPR001611 GO:0005515
Spst9g03123 1089 Pfam Leucine Rich repeat 141 156 IPR001611 GO:0005515
Spst9g03123 1089 PANTHER LEUCINE RICH REPEAT KINASE 2 295 1081 - -
Spst9g03123 1089 ProSitePatterns Protein kinases ATP-binding region signature. 811 834 IPR017441 GO:0005524
Spst9g03123 1089 Gene3D Phosphorylase Kinase; domain 1 771 880 - -
Spst9g03123 1089 SMART LRR_typ_2 419 441 IPR003591 -
Spst9g03123 1089 SMART LRR_typ_2 607 631 IPR003591 -
Spst9g03123 1089 SMART LRR_typ_2 115 139 IPR003591 -
Spst9g03123 1089 SMART LRR_typ_2 371 395 IPR003591 -
Spst9g03123 1089 SMART LRR_typ_2 498 522 IPR003591 -
Spst9g03123 1089 SMART LRR_typ_2 445 468 IPR003591 -
Spst9g03123 1089 SMART LRR_typ_2 140 164 IPR003591 -
Spst9g03123 1089 SMART LRR_typ_2 322 346 IPR003591 -
Spst9g03123 1089 Gene3D Ribonuclease Inhibitor 220 436 IPR032675 -
Spst9g03123 1089 ProSiteProfiles Leucine-rich repeat profile. 500 523 IPR001611 GO:0005515
Spst9g03123 1089 ProSiteProfiles Protein kinase domain profile. 805 1076 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g03123 1089 FunFam Leucine-rich repeat receptor-like kinase 57 169 - -
Spst9g03123 1089 FunFam Tyrosine-sulfated glycopeptide receptor 1 368 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g03123 Spst-Chr9 64922768 64926037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g03123 11 739 Miscellaneous Gene Families AT1G17240 50.000 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Spst9g03123 Pkinase 1.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g03123 - - gmx:100782574 1883.23