Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g03119 ATGAGGGTGAAAGCCAAATTTTTAACTGAGTTAAGTTATAAGCTCATTGCTTCTGGAACAACTGGCCTTTTGGTCTCAACCAGGAAGCATATGTACTGCACAGATTATACCAAATATGATGAAAACGACAAAGCCTCAGCAATCTGGGTCAGCTATAACTCCATGGACTTGATGCAACAAGTTAAAGGCAATTATTCTGATAGCAGGGAGGAAGAGGAGGAAGAAGAAGTAGCTGAGATTATGGCTATCACAAGAGAGCCAGAAAGCAGCAGGTTACACCAGCAAGATGCCGTGTCCAATTTTGGAAAGAAGCTAGACCTGATGGAGTTGTCACTAGGGAGCAACAAGGAAGAGGAAGAGGAGGGCAATTTGCAACAAGGTGGAGGAGGAGTGGTTCATCATTATCATAGTCAACAACAACATGAACATGAACACCAACACCAACATCATCACCATGAAAGTCACGGAACTTGTTCAAACACGAAGGAAGTAGTGGAGAAAGAGCACATGTTTGACAAAGTGGTGACACCAAGCGATGTGGGGAAGTTGAACAGGCTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTTCCCCTTGATTCCTCGTCGAACGAGAAGGGTCTGCTCCTGAATTTCGAGGACCGGAGTGGGAAGGTGTGGCGGTTCAGGTACTCGTATTGGAACAGCAGCCAGAGCTATGTGATGACAAAGGGGTGGAGCCGTTTCGTGAAGGAGAAGAAGCTTGATGCAGGTGACATTGTCTCCTTCCAGCGTGGCCTTGGGGATATGTATAGACATAGGTTGTACATAGACTGGAGGAGAAGGTCTGATCATGCTCATCCTCATCCTCATCCCTCTGATCCCTCAACCTCCCCTTTGTTTCTTCCCTCTATCAGATGGTACTCCCTTCCTGCCACCTCCTCCATCATGCCACCTCGCTACCACCACGATCATCATTTTCACCATCTCAATTACAACAACCTCTTCAGTTTTCAGCAGCAACACCAGTACCTCGGCCATGCTCATGGTGCTGCCACAGCCGCTGCTGCTCATCATCACAATAACTATGGGGAGCATAATTCGGGATCTGGGACTGGCTCACTCTATTACCTCAGGTCCTCCATGTCAATGGGTATGGGTGGTGGTGGTGATCAAAACATGGCAGGAAGAGGGAATAGCATTATGCCCATGATCATCGATTCTGTGCCAGTTAACGTTGGTCATCATAACCATCGCCACGGGCATGGGGGCATGACGAGTGGTGGTGCTAGTGCTGCCACTAGTGGTGGAAAACGACTAAGGCTATTTGGGGTGAACATGGAATGTGCCTCTTCGGCCGAAGATTCGAAAGGCTTGTCATTGGGTTCACATGCAATAGTGGGTAATTCACCTTCTTCTTCTTCTTCTCCGCATCTGCAGCAACGGTTGAGGGTGCCCCACGAAGACCCACTTTCTTCTTCAGCAAGGTTTGGGGATCAAAAAGGCGGGTCTGGGACTTCTCTGCTGTTTGATTTGGATCCCTCCTTGCAGTATCGGCAGTAG 1542 0.4851 MRVKAKFLTELSYKLIASGTTGLLVSTRKHMYCTDYTKYDENDKASAIWVSYNSMDLMQQVKGNYSDSREEEEEEEVAEIMAITREPESSRLHQQDAVSNFGKKLDLMELSLGSNKEEEEEGNLQQGGGGVVHHYHSQQQHEHEHQHQHHHHESHGTCSNTKEVVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRSGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGDMYRHRLYIDWRRRSDHAHPHPHPSDPSTSPLFLPSIRWYSLPATSSIMPPRYHHDHHFHHLNYNNLFSFQQQHQYLGHAHGAATAAAAHHHNNYGEHNSGSGTGSLYYLRSSMSMGMGGGGDQNMAGRGNSIMPMIIDSVPVNVGHHNHRHGHGGMTSGGASAATSGGKRLRLFGVNMECASSAEDSKGLSLGSHAIVGNSPSSSSSPHLQQRLRVPHEDPLSSSARFGDQKGGSGTSLLFDLDPSLQYRQ 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g03119 513 MobiDBLite consensus disorder prediction 114 160 - -
Spst9g03119 513 SMART B3_2 171 276 IPR003340 GO:0003677
Spst9g03119 513 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 88 451 IPR044800 GO:0003700
Spst9g03119 513 MobiDBLite consensus disorder prediction 456 474 - -
Spst9g03119 513 MobiDBLite consensus disorder prediction 455 513 - -
Spst9g03119 513 SUPERFAMILY DNA-binding pseudobarrel domain 168 276 IPR015300 -
Spst9g03119 513 Pfam B3 DNA binding domain 171 275 IPR003340 GO:0003677
Spst9g03119 513 ProSiteProfiles B3 DNA-binding domain profile. 171 276 IPR003340 GO:0003677
Spst9g03119 513 FunFam B3 domain-containing protein 164 284 - -
Spst9g03119 513 CDD B3_DNA 169 258 IPR003340 GO:0003677
Spst9g03119 513 Gene3D - 164 285 IPR015300 -
Spst9g03119 513 MobiDBLite consensus disorder prediction 136 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g03119 Spst-Chr9 64897753 64900274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g03119 161 445 RAV Transcription Factor Family AT2G46870 50.694 1.30e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst9g03119 B3 3.4e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g03119 K09287 - gmx:100812161 515.768