Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g03118 ATGGAGGATGGGAATAGGGTTCCGGCTGGGGATGACCCCTCTTACTGGCTGGATGCGTGTGAGGATATTTCGTGTGATTTCATTGATTTTGATGTCTCATCCATAGTCTCAGAGCAGCCTGACAACCCTTCCAATCAGGACTTCTTCGGTGGCATTGATAAGATTTTGGACAGCATAAAAAATGGTGCCGGTCTCCCTCTGAATCATGGTGAATCTGCTTCCAACTCTAATGGCACAGCAGCAGGAGCAGGAGAAGTTTGGTTTTCCTCCAATGCCACTTTGGCGGATGGGGGGAATCATCATGCTCATGCTCCTGTTCCTGCTCCCACTGATGCTGCTTTTGACCATTCTGCTGCTATTCGGAGTAATGGGTCGAGTAAAGCGTCTAATGGGAATGAAGGGGGGATTTTGATTAGTTATTCTCAGGAAAGAGGGGTTCTGAATGGAGGCCATGATGTTGATAGCGAAGAAAGGTGCAGCAAAAGGCCACGGCTTGGTGGCTACAAGAATGAGAGGTCTCATTATGGTAGAGGGAATTACCAAGGCAAGGAGAGGGAGAGGGGTTTTAATAATAACAGGAAGAGGCCGCGGGATAGGGACGAGGTTGATAGGAGGGATAGGGATGTTGGTGGAAGGAAAAGAGAACATCATGGTGCTGTTGGCAGGAGGGATGTTAGAGATAGGGATTGGAGGGATAGAGAATCTAGGGGTTACTGGGAGAGGGATAAGTCAGGTAACAATGATATGGTCTTTCGCCTGGGTGCTTGGGAACCCGACCGTAATCGAGAAGACAAAATGGCAAGTGACGTGAAACAAGAGAACAATGGGAAGCTTGATAAGAAATCTGAGGAGGCTAAGGAGAGGGTTCCTGAGGAAAAAGCTAGACAATATCAGTTGGATGTTCTCGACCAAGCAAAGAGGAAAAATACTATAGCTTTCCTTGAAACAGGAGCAGGGAAAACCTTGATTGCTGTTCTTCTCATTAAAAGTATACAGGAGAGTTTGCAGAAGCAAAATAAGAAAATGCTTGCAGTATTTTTAGTTCCAAAAGTTCCACTTGTTTACCAGCAAGCTGAAGTGATTCGTGAGCGTACTGGTTATCAAGTAGGCCACTATTGTGGAGAAATGGGACAGGATTTCTGGGATGCTCGAAGGTGGCAGCGTGAATTTGATACCAAACATTATTTTCTGACTTCAGATTCTGTTTTCTTCTCCATCTTTGTCCACATTCTCCTCACATTAAGAGTTGGCTACTGGTTTAGAAAATTGTACACATCTGTTCAGGTTTTAGTCATGACTGCTCAAATTCTTTTGAACATTTTGAGGCATAGCATAATAAAAATGGAAGCAATCAATCTCTTGATTCTGGATGAGTGCCACCATGCCGTGAAGAAACACCCATATTCACTGGTGATGTCTGAGTTCTACCATACAACACCCAAAGAGAAGAGGCCATCTGTGTTTGGAATGACTGCTTCTCCTGTCAACTTGAAGGGTGTCTCCAGCCAAGTAGATTGTGCAATAAAAATTCGCAATCTTGAAAGTAAGCTAGATTCTATAGTTTGCACCATTAAAGATCGAAAGGAGCTGGAGAAACATGTGCCAATGCCCTCTGAAGTTGTGGTGGAGTATGATAAAGCTGCCAGCTTATGTTATCTACATGAGCAGATAAATCAGATGGAGGTTGAAGTTGAAGAAGCTGCAAAATCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTGTTAATTATGCACTTGGTGAACTGGGACAATGGTGTGCGTACAAGGTTGCACAATCCTTTTTAGCAGCTTTGCAAAATGATGAAAGGGCCAACTACCAACTTGATGTCAAGTTTCAGGAATCTTATCTGAGTAAAGTTGTTTCTCTTCTGAAATGCCAACTGTCAGAGGGTGCAGTTTCTAACAAAAATGCTGGTATTGATGATTCGGAGAATGGTGCAGCTCAATGTGTTTCTGAGCGTGATGAGATGGAAGAAGGGGAGCTTCCAGACAGTCATGTTGTCTCTGGCGGAGAGCATGTGGATGTCATTATAGGAGCTGCCGTGGCTGATGGCAAGGTGACCCCCAAAGTGCAGGCACTAATCAAAATACTTCTCAAGTATCAGCATACAGAAGACTTCCGTGCAATCATATTTGTTGAGCGTGTTGTGTCTGCATTAGTTCTGCCCAAGGTCTTTGCAGAGCTTCCATCTCTTAGTTTTGTTAAGTGTGCAAGCTTGATTGGCCACAATAATAGTCAGGAAATGCGGACCTACCAAATGCAAGATACAATTTCCAAATTCCGTGATGGACGGGTCACGTTGTTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCCGGCAATGCAATGTTGTTATTCGCTTTGACCTTGCAAAGACTGTTTTGGCATACATTCAATCTAGGGGACGTGCTAGAAAACCTGGATCTGATTACATCCTGATGGTTGAGAGGGGCAATTTGTCACATGAAGCATTCCTAAGGAACGCTAGGAACAGTGAAGAGACTTTGCGCAAAGAAGCAATAGAGAGAACCGACCTTAGTCATCTGAAGGACACTTCCAGATTGATTTCTGTTGACACCAGGCCTGGAACAGTTTACCAGGTGAAGTCAACTGGTGCAGTTGTGAGTCTTAATTCTGCTGTAGGTCTTATCCACTTCTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGTCCTGAGTTTATTATGGAGAAGCATGAAAAACCAGGAGGTCCCACAGAATATTCTTGCAAGCTTCAACTGCCGTGTAATGCACCATTTGAAAATCTTGAGGGTCCGATATGCAGTTCTATGCGTCTGGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAACTGCATGAGATGGGGGCATTCACTGACATGCTATTGCCTGATAAAGGAAGTGGGGGAGAAAGAGAAAAGGATGAACAAACTGATGAAGGAGATCCACTTCCAGGGACTGCTAGACATAGGGAGTTCTATCCTGAAGGTGTGGCTGACATACTAAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCAAAGACTCCAAATTGCTTCATCTTTACATTTATGCTGTGAAGTGCGAAAATATAGGTCACTCAAAGGATCCGTTCTTGACTCAAGTTTCAAATTTTGCGGTACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACTGTGACTACAAAGGCATCTCTTGTCTTTATGGGGTCGATAAATATCACTGAGAGTCAGCTGGCATCCCTGAAAAGCTTTCATGTAAGATTGATGAGCATTGTCTTGGATGTGGATGTTGAACCATCTACCACTCCTTGGGATCCTGCAAAGGCATATTTGTTTGTCCCAATGTTTGGCGATAAGTCTGTAGATCCTATGAACCAAATTGACTGGCATCTGGTTGAGACAATAATTGGAGCCGATGCATGGAAAAATCCCCTCCAGAAAGCTCGACCAGATGTTTACCTTGGTACTAATGAGAGAACGTTAGGTGGAGACAGAAGGGAATATGGATTTGGGAAATTGCGTCATGGCATGGCTTTTGGGCAAAAATCACATCCTACATATGGAATCAGAGGAGCTGTGGCCCAGTTTGATGTGGTCAAAGCTTCAGGATTGGTTCCTCATAGAGATTCCATGCAAACACAAAAGCAAATCAGTATGACTACCGATGGAAAATTGATGATGGCAGATACCTGTACTAATGCAGAGGATCTGGTAGGGAAAATTGTAACTGCTGCTCATTCAGGGAAGAGGTTTTATGTTGATTCAATACGCAGTGACATGTCAGCAGAGAACTCTTTCCCTAGGAAAGAAGGTTATCTTGGTCCTCTGGAGTACAGTTCATATGCTGATTACTACAAGCAAAAGTATGGAGTTTATTTGATTTACAAGCAGCAACCTTTAATAAGAGGGCGTGGTGTATCATACTGCAAGAATCTTCTTTCCCCTCGATTTGAGCACAGTGAAGCACATGAAGGTGACTCTGAAGAGGCACATGACAAAACTTATTATGTTTTCCTTCCTCCTGAGCTCTGCCTTGTACATCCACTGCCTGGATCACTTGTCCGTGGTGCCCAGAGGTTGCCTTCAATAATGAGGAGGGTTGAAAGTATGCTACTTGCAGTTCAGATTAAGAATATGATAAATTATCCTGTCCATGCTTCAAAGATCTTGGAAGCCTTGACCGCTGCCTCTTGCCAGGAGACATTCTGCTATGAAAGAGCAGAGCTTCTTGGAGATGCTTACCTGAAATGGGTTGTGAGCCGATTTCTTTTTCTAAAATACCCGCAGAAACATGAAGGTCAACTTACTAGGATGAGACAACAAATGGTCAGTAACATGGTATTATATCAGTATGCATTAAGTAAAGGGCTTCAATCATATATTCAAGCCGATCGCTTTGCTCCATCCAGATGGGCAGCTCCTGGGGTTCTGCCTGTCTTTGATGAGGATACCAAGGATGGGGAGTCATCTTTGTTTGACCAGGAGCGATCCATTTCTAAAACTGAGAAAATGGATTGTCAGACAGATGGATATGAGGATGAGATGGAAGATGGCGAGCTTGAGAGTGATTCAAGTTCTTACAGAGTTCTGTCCAGTAAGACACTTGCAGATGTTGTGGAAGCACTGATTGGGGTATATTACGTAGAAGGTGGTAAAAATGCTGCTAATCACCTTATGAAATGGATTGGGATTCAAATAGAGTTTGATCCTGATACGATGGAGTGTACAAGAAAGCCATTTAATGTTCCAGACAGCATACTTAGGAGTGTTGATTTTGATGCTTTAGAGGGTGCTTTAAATATGAAGTTTAAAGACAGGGGGCTGTTAGTAGAATCCATCACACATGCCTCCCGACCATCTTCAGGAGTATCCTGTTATCAGCGGTTGGAGTTTGTTGGTGATGCGGTCTTGGATCATCTTATCACCAGGCACTTGTTTTTCACTTACACAAATCTGCCACCAGGACGGCTCACTGACCTTCGGGCTGCTGCTGTAAACAATGAAAATTTTGCACGTGTTGCAGTTAAACACAACCTTCATGTGCATCTCCGACATGGATCCAGTGCCCTAGAAAAACAGATTAAAGAATTTGTGAAGGAGGTTCAAGATGAATTGTCAAAGCCAGGTTTTAACTCCTTTGGTCTGGGAGACTGCAAAGCTCCCAAGGTCCTTGGTGACATTGTTGAATCTATTGCAGGTGCCATTTTTCTTGACAGTGGAAGGGATACTACTGTTGTTTGGAAGGTTTTTCAGCCTCTTCTGCATCCTATGGTTACCCCAGAGACTCTACCAATGCACCCTGTGCGAGAGCTGCAAGAGCGATGCCAGCAGCAAGCTGAAGGCTTAGAGTATAAAGCAAGTCGTATTGGCAATTTAGCGACTGTTGAAGTATTCATTGATGGGGTGCAAGTTGGTGCTGCTCAAAATCCACAGAAAAAGATGGCACAGAAATTAGCTGCCAGAAATGCCCTTGCTGCTTTGAAAGAGAAGGAGGCGGGAAAAACTCAGGAGAAGAATGACGAAAACGGGAAAAAGAATGGAAACCAGACATTCACTAGGCAAACATTAAATGATATCTGTTTACGAAGAAATTGGCCTATGCCATTCTATAGGTGTGTAAATGAGGGTGGTCCAGCACATGCAAAGAGGTTTACATTTGCGGTGCGAGTCAATACTACTGACAGAGGATGGACGGATGAATGTGTTGGAGAGCCAATGCCAAGTGTCAAAAAGGCCAAAGACTCAGCTGCCGTTCTACTCTTGGAACTACTAAACAAATTATACTCGTGA 5964 0.4373 MEDGNRVPAGDDPSYWLDACEDISCDFIDFDVSSIVSEQPDNPSNQDFFGGIDKILDSIKNGAGLPLNHGESASNSNGTAAGAGEVWFSSNATLADGGNHHAHAPVPAPTDAAFDHSAAIRSNGSSKASNGNEGGILISYSQERGVLNGGHDVDSEERCSKRPRLGGYKNERSHYGRGNYQGKERERGFNNNRKRPRDRDEVDRRDRDVGGRKREHHGAVGRRDVRDRDWRDRESRGYWERDKSGNNDMVFRLGAWEPDRNREDKMASDVKQENNGKLDKKSEEAKERVPEEKARQYQLDVLDQAKRKNTIAFLETGAGKTLIAVLLIKSIQESLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHYFLTSDSVFFSIFVHILLTLRVGYWFRKLYTSVQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQINQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAVNYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSNKNAGIDDSENGAAQCVSERDEMEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEKPGGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEREKDEQTDEGDPLPGTARHREFYPEGVADILKGEWILSGKDACKDSKLLHLYIYAVKCENIGHSKDPFLTQVSNFAVLFGNELDAEVLSMSMDLFIARTVTTKASLVFMGSINITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMFGDKSVDPMNQIDWHLVETIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPHRDSMQTQKQISMTTDGKLMMADTCTNAEDLVGKIVTAAHSGKRFYVDSIRSDMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVYLIYKQQPLIRGRGVSYCKNLLSPRFEHSEAHEGDSEEAHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQIKNMINYPVHASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSLFDQERSISKTEKMDCQTDGYEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIQIEFDPDTMECTRKPFNVPDSILRSVDFDALEGALNMKFKDRGLLVESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTTVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEAGKTQEKNDENGKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS 1987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g03118 1987 PANTHER DICER-RELATED 1283 1890 - -
Spst9g03118 1987 SMART helicmild6 764 850 IPR001650 -
Spst9g03118 1987 FunFam Endoribonuclease dicer-like 1 1645 1819 - -
Spst9g03118 1987 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 301 512 IPR014001 -
Spst9g03118 1987 Pfam Dicer dimerisation domain 923 1011 - -
Spst9g03118 1987 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 862 IPR027417 -
Spst9g03118 1987 Gene3D Ribonuclease III domain 1427 1623 IPR036389 GO:0004525|GO:0006396
Spst9g03118 1987 Gene3D Ribonuclease III domain 1646 1819 IPR036389 GO:0004525|GO:0006396
Spst9g03118 1987 MobiDBLite consensus disorder prediction 147 225 - -
Spst9g03118 1987 Pfam PAZ domain 1279 1426 IPR003100 GO:0005515
Spst9g03118 1987 FunFam Endoribonuclease dicer-like 1 918 1019 - -
Spst9g03118 1987 SMART PAZ_2_a_3 1266 1430 IPR003100 GO:0005515
Spst9g03118 1987 Gene3D paz domain 1286 1404 - -
Spst9g03118 1987 SUPERFAMILY dsRNA-binding domain-like 1780 1906 - -
Spst9g03118 1987 MobiDBLite consensus disorder prediction 1887 1902 - -
Spst9g03118 1987 CDD RIBOc 1445 1627 IPR000999 GO:0004525|GO:0006396
Spst9g03118 1987 CDD DEXHc_dicer 293 526 - -
Spst9g03118 1987 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 735 895 IPR001650 -
Spst9g03118 1987 MobiDBLite consensus disorder prediction 1009 1036 - -
Spst9g03118 1987 FunFam Endoribonuclease dicer-like protein 1428 1621 - -
Spst9g03118 1987 CDD DSRM_DCL_plant 1915 1976 - -
Spst9g03118 1987 SUPERFAMILY dsRNA-binding domain-like 1913 1983 - -
Spst9g03118 1987 Gene3D Dicer dimerisation domain 918 1019 IPR038248 -
Spst9g03118 1987 ProSiteProfiles Ribonuclease III family domain profile. 1449 1609 IPR000999 GO:0004525|GO:0006396
Spst9g03118 1987 Gene3D - 721 887 IPR027417 -
Spst9g03118 1987 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1824 1887 IPR014720 -
Spst9g03118 1987 MobiDBLite consensus disorder prediction 1887 1908 - -
Spst9g03118 1987 Gene3D - 413 578 IPR027417 -
Spst9g03118 1987 Pfam Ribonuclease III domain 1685 1798 IPR000999 GO:0004525|GO:0006396
Spst9g03118 1987 Pfam Ribonuclease III domain 1463 1609 IPR000999 GO:0004525|GO:0006396
Spst9g03118 1987 Gene3D - 1915 1985 - -
Spst9g03118 1987 SUPERFAMILY PAZ domain 1286 1406 IPR036085 GO:0005515
Spst9g03118 1987 FunFam Endoribonuclease Dicer homolog 1 289 356 - -
Spst9g03118 1987 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 923 1018 IPR005034 GO:0016891
Spst9g03118 1987 FunFam Endoribonuclease dicer-like 1 722 884 - -
Spst9g03118 1987 Pfam Type III restriction enzyme, res subunit 300 494 IPR006935 GO:0003677|GO:0005524|GO:0016787
Spst9g03118 1987 MobiDBLite consensus disorder prediction 1012 1036 - -
Spst9g03118 1987 SUPERFAMILY RNase III domain-like 1649 1820 IPR036389 GO:0004525|GO:0006396
Spst9g03118 1987 Gene3D - 1822 1900 - -
Spst9g03118 1987 ProSiteProfiles PAZ domain profile. 1266 1406 IPR003100 GO:0005515
Spst9g03118 1987 Gene3D - 288 412 IPR027417 -
Spst9g03118 1987 SMART DRBM_3 1825 1886 IPR014720 -
Spst9g03118 1987 SMART DRBM_3 1910 1983 IPR014720 -
Spst9g03118 1987 FunFam Endoribonuclease Dicer 1 1286 1404 - -
Spst9g03118 1987 SUPERFAMILY RNase III domain-like 1422 1627 IPR036389 GO:0004525|GO:0006396
Spst9g03118 1987 ProSiteProfiles Ribonuclease III family domain profile. 1650 1798 IPR000999 GO:0004525|GO:0006396
Spst9g03118 1987 CDD SF2_C_dicer 728 858 - -
Spst9g03118 1987 MobiDBLite consensus disorder prediction 149 225 - -
Spst9g03118 1987 CDD RIBOc 1666 1821 IPR000999 GO:0004525|GO:0006396
Spst9g03118 1987 MobiDBLite consensus disorder prediction 262 292 - -
Spst9g03118 1987 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1909 1982 - -
Spst9g03118 1987 SMART ultradead3 290 527 IPR014001 -
Spst9g03118 1987 Pfam Helicase conserved C-terminal domain 731 848 IPR001650 -
Spst9g03118 1987 SMART riboneu5 1665 1821 IPR000999 GO:0004525|GO:0006396
Spst9g03118 1987 SMART riboneu5 1445 1629 IPR000999 GO:0004525|GO:0006396
Spst9g03118 1987 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1909 1984 IPR014720 -
Spst9g03118 1987 FunFam endoribonuclease Dicer homolog 1 1915 1984 - -
Spst9g03118 1987 ProSitePatterns Ribonuclease III family signature. 1685 1693 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g03118 Spst-Chr9 64876574 64888743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g03118 747 890 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 1.92e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g03118 K11592 - gmx:100780953 3532.27