Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g03116 ATGTCACGTATTGTCCTCCTGACTTTTGTTGGGCTTATTGTGTTCTTTCCATTTTCTTGTTCCCTCCAAGAGCAAGGAAAAGAGCCACAAGCTCCTTTGCTTCCAAACTCTTGCAATGAAACATGCGGGGACTTCCATGTTCCATTTCCCTTCTATGTCAACTCTTCTTGTGAGTCGATTTCCAGTGCCTTCCATCTGTCGTGCACAAATTCATCTGCCCTTTTGCTCAGAATTGGCTCGGTTAGCTACACGGTCTTGGAATTCTTCCCAGATGGTGTGCTGGTGGACTTTCCCGGCTCATCGTCCTGTAGACAGTACAATGACTTGAATTCTTTTGGCAGAAGCTTTGCAGGGAAGGACAACTTTGGAGTCTCGGTTGACAATGTTATTGGCCTCTATGATTGTGAGGATTCCTCTCTGTGCAAAGCAGATTGTGAAACTATTGACTTGCCTGGTTGTGATGGAAGGGGTGGAGGTTCTCTTGCCTGTTGCTATCCACTCTCTGACCATACCATATGGCATGTTGGAGATGGGTTTTCGGTGTTTTCTCAGTTTGGATGCAGGGGGGTTTCTAGTTGGGCCGTTTTGCGAGGCTCAACTTGGGGAAAACGTGGGGTCAAGTTGGAATGGGCACTTCCCCGAAACTCCTCTAAGCAAGTTTGTGCAAGGAATGCTTACATGGCCAATGCTACAGCAATCGAAGGAGGCGTGAGATGTGTCTGTCAAAATGGATATGTTGGTGATGGTTTCGCTAATGGGACTGGATGTCTGCAGGCCTGCATAAAGGACGGAAAGGAAGCATATGGAAGTGACTGCGACGGCAAAAGACATGATCAAAGGAAATTTGTTATAATTGCCGGAATCGTTGGCCCAGTTCTGATTGTTGCCTCCCTGATTGCACTATTTTATCTTCTTAAAAGGCCAACAAAAGCGGGGATGTTTGACACCGAGCAAGCTTACTATCAAAACATTTCAATCCCCAAAGCTTGTAAAACTCGACTATTCAGCCTCCACGAGCTAGATGAAGCCACTAAAGGTTTTGAAGAGGGTCAGAAACTTATGCATGGCAACAATGGGACAATCTTCGCTGGAGTTTTAGGGGATGGGTCTCACATAGCTGTCCACAAATTACAATGTGAGAAGAAAGACTTAATTCAAGTCCTGTCACAGATCGAGGTTCTATCTTCTATAGTACATAGAAACATGGCCCGGATTCTTGGTTGCTGTATTGAATCTGGCAACACTTTGGTAGTTTATGAGTTTCCTTCCAATGGTACTCTGGAGGAATATTTACATCAAAGCAAAGGACAACAACTTCGTTTAGATTGGTATAGGAGACTGACTATTGCTGCAGAAACAGCGAGTATTCTTGCATTCCTACACTTCGAGAACTATCCTCCCATATTTCACCATAACCTTAAATCTGCCTGCATCTTCCTAGATGATGATTATTCTGTCAAGATTGCAGGATTTGGTCTGATCAACTCCAATTTTTACTATGGTTCTAACTTACACAAGAACTATGAAGGCTTTGGCATCTGCAAAAATGATGTTTATGACATGGGTGTATTGCTTCTTGAGATTATCTCAGGCTCAAATCGCTTGGATTTACCAACTTTGGCCTTGCAGCAAATAAGGGCAGGAAAATTTGAAGATATTTTTGACCCCTTTCTTTGCTACCATGAACAACCACATTATCGCCAAGAGCAAATGCAAATCATTGCAGATCTTGCCACAAGATGCCTGTTATTTGGTGGAGATGGAAGGCTAGGAATGGTTGATGTTGTGAGGGAGTTAGTACACTTGACTAAAGAAAGTCTTGATAGCAAAGGACCTGCACTGGAGGAGACATTCTCAAATTCAAGCCTTCTTCAGATGATATCACTGTCTCCTGATTCTATGAATGTCCCCTGA 1914 0.4363 MSRIVLLTFVGLIVFFPFSCSLQEQGKEPQAPLLPNSCNETCGDFHVPFPFYVNSSCESISSAFHLSCTNSSALLLRIGSVSYTVLEFFPDGVLVDFPGSSSCRQYNDLNSFGRSFAGKDNFGVSVDNVIGLYDCEDSSLCKADCETIDLPGCDGRGGGSLACCYPLSDHTIWHVGDGFSVFSQFGCRGVSSWAVLRGSTWGKRGVKLEWALPRNSSKQVCARNAYMANATAIEGGVRCVCQNGYVGDGFANGTGCLQACIKDGKEAYGSDCDGKRHDQRKFVIIAGIVGPVLIVASLIALFYLLKRPTKAGMFDTEQAYYQNISIPKACKTRLFSLHELDEATKGFEEGQKLMHGNNGTIFAGVLGDGSHIAVHKLQCEKKDLIQVLSQIEVLSSIVHRNMARILGCCIESGNTLVVYEFPSNGTLEEYLHQSKGQQLRLDWYRRLTIAAETASILAFLHFENYPPIFHHNLKSACIFLDDDYSVKIAGFGLINSNFYYGSNLHKNYEGFGICKNDVYDMGVLLLEIISGSNRLDLPTLALQQIRAGKFEDIFDPFLCYHEQPHYRQEQMQIIADLATRCLLFGGDGRLGMVDVVRELVHLTKESLDSKGPALEETFSNSSLLQMISLSPDSMNVP 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g03116 637 FunFam probably inactive receptor-like protein kinase At2g46850 319 421 - -
Spst9g03116 637 Gene3D Transferase(Phosphotransferase) domain 1 423 618 - -
Spst9g03116 637 Pfam Protein tyrosine and serine/threonine kinase 349 497 IPR001245 GO:0004672|GO:0006468
Spst9g03116 637 SUPERFAMILY Protein kinase-like (PK-like) 329 599 IPR011009 -
Spst9g03116 637 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 32 603 IPR045274 GO:0007166
Spst9g03116 637 FunFam Putative WAK-related receptor-like protein kinase family protein 423 611 - -
Spst9g03116 637 Gene3D Phosphorylase Kinase; domain 1 312 421 - -
Spst9g03116 637 Pfam Wall-associated receptor kinase galacturonan-binding 38 88 IPR025287 GO:0030247
Spst9g03116 637 ProSiteProfiles Protein kinase domain profile. 347 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g03116 Spst-Chr9 64869413 64872042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g03116 38 617 Receptor kinase-like Gene Family AT2G23450 28.910 2.02e-56 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Spst9g03116 PK_Tyr_Ser-Thr 4.6e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g03116 - - gmx:100810557 1156.35