LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst9g03115	ATGGACGCCTACTCCTCTGGAGAAGAAGTGGTTATTAAGACAAGAAAACCATATACCATCACAAAGCAGAGAGAACGATGGACAGAGGAGGAACATAATAGATTTCTAGAAGCCTTAAAGCTATACGGGCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAGACTGCTGTGCAAATCAGAAGTCACGCTCAGAAATTCTTTTCAAAGTTGGAGAAAGAGGCCTTTGTAAAGGGTGTTCCAATTGGACAAGCTCTTGATATAGACATCCCCCCTCCAAGACCAAAAAGAAAACCAAGCAATCCTTATCCCCGGAAGACCAATGCGGGTCTTTCAACATTACACAGTGGAGCAAAGAATGGAAAGTCTCTGCTTTCAATTGCATCTTCACATGGTAAACAAGCACTGGACTTGGAGAAAGAACCACTTCCAGAGAAGCATGATGTCGACCTAATGCCATCAAGTGTAGAAGAAAATAAGGACGAAAGCAGCTCAAAAGTATTTACCATTCTCCAGGAGGCACCTTCTTCATCTGTATCACTGCCGCTGAGAAATTCATGTGCCTTAAGAGAGTTTATACCTTCAATAAAAGAGGTAATAACTCTTGATGAAACAAATGAATCTTTTATCACTGATGAGCTTGAAAATCAGAAGTTGGAGTTAGATGATGGAAAGCACACACAAAAGAGTAATGGCGCATGTAAAGTCTCTAAGTTGGAGAATGCTGGTTCTTTGAAATTGGTTCAAACTGAGAAAACAGATAGTCCTCATTGTACATTAACAATAGATGGTATGCAAGGAAATCAGAATTACCCAAGACATGTCCCTGTGCACATTGTTGATGAGAACTTTGGAACTAGTAATCAAAATCCATCCCCAGATATGGTGGTTCAAGACTGCATATTTCAGCCAATTGGAGGGATTAATGGGCAACCTAAGATTGTCACCACTTCTACTGCATCAGACATAAGTGAAAGTCAAAATAACACAGCACGGTCCTCTATTCATCAATCATTTCTTCCTTGTCCTCCCTTCACACAACATAATCAGGATGATTACCATTCATTTCTTCACATGTCCTCCACATTTTCAAGTCTTATTGTCTCTACCTTGCTACAAAACCCTGCTGCCCATGCTGCAGCAAGTTTTGCTGCTACATTTTGGCCCTATGCAAATGCAGAAACTTCCTCAGATTCTCCCGTGTGCATTCCAGGTTTTCCATCTGGACAAATTGGCTCTCCTCAAAGTGTGTCAGCTATTGCAGTTGCTACAGTAGCCGCCGCAACTGCATGGTGGGCTGCTCATGGACTTCTTCCTTTGTGTACTCCACTTCATACGGCCTTTGCTTGTCCTCCAGCATCAGCAACTGCAGCTCCATGCATGACTATGGGTGAATTACCAGAAAAAAGCCAACAAGAGATTAAGCTACAAAAGCCTACTCTGCAAGATCAGATACTGGATCCTGAACAATCAGAAGTTCTGCAAGCTCAACACTCAGCTTCGAAGTCACCAGCTGTTTCTTCATCCGAATCTGAGGAGAAGGGAGACACCAATGTAAATACTACATCAAAGGCTACTAATCATGAGATGAACCAAGCAATTTCCGAGAATCCAGATTCGGACAAAATAAAAGGCAGAAAACCAGTAGACCGCTCGTCGTGTGGTTCTAACACAGCCTCAAGCAGTGAAGAGACTGAAATACTAGAGAAGGATGAGAAAGACAAGGAAGAGCCCAACACACCTGATGCAAACCTTTTAGGTACTGAGCCTAATAATCGTCGCAGTAGAAGCATTAGCTACCTTACTGATTCTTGGAAGGAGGTATCTGAAGAGGGGCGGCTTGCTTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGCTTTTCACCTCCTCCTCATTTGATAAATGCAGATAATCAGATAGACAGCATCAAGGATAAAAAGCAAAACACAGACTTCAAAGATGAAGACCTTGAAACCAAAAACTGCAGTCCTAATTTTGATGGGGTGCCGAAAATTCTGCCATTTGTCAAAGATAATCGTGAGGGGGAGGGATTGCTAACCATAGGTCTTGGACAAGGAAAGCTGAAGACACGTCGGACAGGGTTTAAACCTTACAAAAGATGTTCAGTAGAGGCCAATGAAAACATGATCGGAACGGCCTGCAACCAAGGTGAAGAGAAAGGTCCTAAGAGAATACGCTTGAATGAGGAAGCTTCAACTTGA	2232	0.4274	MDAYSSGEEVVIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEAFVKGVPIGQALDIDIPPPRPKRKPSNPYPRKTNAGLSTLHSGAKNGKSLLSIASSHGKQALDLEKEPLPEKHDVDLMPSSVEENKDESSSKVFTILQEAPSSSVSLPLRNSCALREFIPSIKEVITLDETNESFITDELENQKLELDDGKHTQKSNGACKVSKLENAGSLKLVQTEKTDSPHCTLTIDGMQGNQNYPRHVPVHIVDENFGTSNQNPSPDMVVQDCIFQPIGGINGQPKIVTTSTASDISESQNNTARSSIHQSFLPCPPFTQHNQDDYHSFLHMSSTFSSLIVSTLLQNPAAHAAASFAATFWPYANAETSSDSPVCIPGFPSGQIGSPQSVSAIAVATVAAATAWWAAHGLLPLCTPLHTAFACPPASATAAPCMTMGELPEKSQQEIKLQKPTLQDQILDPEQSEVLQAQHSASKSPAVSSSESEEKGDTNVNTTSKATNHEMNQAISENPDSDKIKGRKPVDRSSCGSNTASSSEETEILEKDEKDKEEPNTPDANLLGTEPNNRRSRSISYLTDSWKEVSEEGRLAFQALFSREVLPQSFSPPPHLINADNQIDSIKDKKQNTDFKDEDLETKNCSPNFDGVPKILPFVKDNREGEGLLTIGLGQGKLKTRRTGFKPYKRCSVEANENMIGTACNQGEEKGPKRIRLNEEAST	743

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst9g03115	743	SUPERFAMILY	Homeodomain-like	18	74	IPR009057	-
	Spst9g03115	743	SMART	sant	23	71	IPR001005	-
	Spst9g03115	743	MobiDBLite	consensus disorder prediction	729	743	-	-
	Spst9g03115	743	MobiDBLite	consensus disorder prediction	88	116	-	-
	Spst9g03115	743	MobiDBLite	consensus disorder prediction	494	595	-	-
	Spst9g03115	743	Pfam	Myb-like DNA-binding domain	24	67	IPR001005	-
	Spst9g03115	743	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	22	71	IPR006447	GO:0003677
	Spst9g03115	743	MobiDBLite	consensus disorder prediction	494	539	-	-
	Spst9g03115	743	ProSiteProfiles	SANT domain profile.	22	73	IPR017884	-
	Spst9g03115	743	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	19	73	IPR017930	-
	Spst9g03115	743	CDD	SANT	26	69	IPR001005	-
	Spst9g03115	743	FunFam	protein REVEILLE 6 isoform X1	26	74	-	-
	Spst9g03115	743	ProSiteProfiles	Myb-like domain profile.	19	69	IPR001005	-
	Spst9g03115	743	MobiDBLite	consensus disorder prediction	724	743	-	-
	Spst9g03115	743	Gene3D	-	26	73	-	-
	Spst9g03115	743	MobiDBLite	consensus disorder prediction	565	581	-	-
	Spst9g03115	743	PANTHER	SWI/SNF COMPLEX-RELATED	7	576	-	-
	Spst9g03115	743	MobiDBLite	consensus disorder prediction	140	164	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst9g03115	Spst-Chr9	64857472	64865427	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Spst9g03115		Myb_DNA-binding	2.7e-13	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst9g03115	K12133		-	gmx:780540	1124