Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g03109 ATGGGTGAAGTGGTGGGTGAGCAGGGTGTGATGCAGACGCAGGGAGAACAGAGCAATAATGCCTCCACTGTTCGGTGGGAACGGTTTCTGCCTCGGGTGGTGCTTCGGGTGTTGCTTGTCGAAGCTGATGATTCTACTCGACAGATCATTGCTGCTCTTCTTCGTAAATGCAGTTACAAAGAACAACAACAACGACAAAAGGATAAAACCCTCAAAAACTTTATGTTCAAGAGGATCAAGGCGACATCATTTGTTAGTCAGGGGAAGGAACGGTTAGAGAGGGCCTCTGGTTTTCACACCAGTTGTAGAGTTGCCACAGTTTGTGACGGCATAAAGGCATGGGAGACGTTGAAGAACAAAGCATCTGACATAGATCTCATATTAACTGAAGTGGATTTACCATCAATATCTGGATTTTCACTTCTCAGTTTAATCATGGAGCATGACGTTTGCAAAAACATTCCCGTAATAATGATGTCTTCTCATGATTCAGTTAGCATGGTGTTCAAGTGCATGTTAAAAGGAGCAGCTGATTTTCTTATAAAGCCTGTGCGCAAGAATGAGCTAAGAAACTTGTGGCAGCATATTGAACTTGGTTTTGCTGCAGAAAACCATGCTACAACCAGTGATTCTAGTGGTTCTGTGGCTTCTACACCAAAAAACAATGAATGCAGTGAGAAAACAAGTGAGGCTCAAGATATTTCACAGCTGAAGAGTTCTTCAAATTTGGGCGATATTTACACAGTTAAGCATGAAAACTCTACAAAATGTGAAAGGGAATCAGATAAGCATAATGATGAAGCTGGAGAGAAATCAATATTTATATCAGAAGGTGAAGGGTGCAGCAAAACTTTTAAACCAACAAGCTTATGGCCAGGTCAAGGCTATGATTGTGGTGAACTGAGAAATCAAGATGAAGTTCTAAGAATAGAGTCGAGCAAACCCAATCCTGAGATTAATGTCAATATTCATGGATGCAGTGATGAATTGGAAGGTCCTTCTACTGGCGCCATTGACTTGATTGCTACATTCAATAATCTTCCAAAGAGCACTGATAAAAAAATTAGTTTCAGTAGTGGTAACATTGCCAAGTTTGACTTTGATACACAATTGGAACTTTCTATAAGAAGATATTTTCCTGGAAGTTCATATAAAACTGCATTTGAGGAAAGACAGATATTGAACCATTCAAATGCTTCTGCCTTTTCTAGGTATGGTAGTAGTAAATTGTTGCAGCCCCTTTATCCAACACCATCAACTATCCCTGCAAAATTAACAGATAGCCATATTTCTCTTAACTCCCATTCATTTTCTGAAAACGCATCTACTTCTCATCAATATGGTGTTAAAAAACAAAATCAGGAGAAAATCACCACTTCAGATATTGGTCAATCTGGACAAGTTGATCCAAAATTACCAAACAGTCATCTTGGATTGTTTCCTGCTAGAGGGGTTACTTATGACCAAAAGTCAACTGGAAATGAAAATCTCTTCCCTTCCATGCTTTATTCTCAGTCAGGTGTGCATCATCCGTCATGGACACCAAAATCAGTGTTCCAGAAAGAGAGTTCTCCATTTAATACAAGTAATTCCTCCCAGTCTAATCCTCAAAGTCACAACTCAAAACGTCATCACTGGTCTGACGATGCAACCCATGCTTCTGATAAAAATGTAAATAACCGAAGCAATTTGGATTGTGAGACACAGGGATCTCCTGCTGCTAGGCTGAGTGCTGATACTGGTCTTTACCATGAAACAACAAATCATAATTGTAATGGTGTATACAGTAGCATAGGCTGCAAAATTGGTGGAAATGCTACTTCAGCTAAGGTAGCCAAGGACAACCATGACAGTTTCATTGATGGGGGTCACCTGGGTTATGATGGACTTCTAGGGACAGATTCTCATCGCACCACCCAACGAGAAGCAGCTCTAACGAAGTTTCGTCTTAAGCGGAAAGACAGATGCTATGAGAAAAAGGTGCGATATCAAAGCCGTAAGAGACTGGCAGAGCAGCGTCCTCGGGTGAAAGGACAGTTTGTTCGCCAAGTTCACAGTGATCATCCCGTATCAGATCTGGGTGGTGATTCCTGA 2094 0.4102 MGEVVGEQGVMQTQGEQSNNASTVRWERFLPRVVLRVLLVEADDSTRQIIAALLRKCSYKEQQQRQKDKTLKNFMFKRIKATSFVSQGKERLERASGFHTSCRVATVCDGIKAWETLKNKASDIDLILTEVDLPSISGFSLLSLIMEHDVCKNIPVIMMSSHDSVSMVFKCMLKGAADFLIKPVRKNELRNLWQHIELGFAAENHATTSDSSGSVASTPKNNECSEKTSEAQDISQLKSSSNLGDIYTVKHENSTKCERESDKHNDEAGEKSIFISEGEGCSKTFKPTSLWPGQGYDCGELRNQDEVLRIESSKPNPEINVNIHGCSDELEGPSTGAIDLIATFNNLPKSTDKKISFSSGNIAKFDFDTQLELSIRRYFPGSSYKTAFEERQILNHSNASAFSRYGSSKLLQPLYPTPSTIPAKLTDSHISLNSHSFSENASTSHQYGVKKQNQEKITTSDIGQSGQVDPKLPNSHLGLFPARGVTYDQKSTGNENLFPSMLYSQSGVHHPSWTPKSVFQKESSPFNTSNSSQSNPQSHNSKRHHWSDDATHASDKNVNNRSNLDCETQGSPAARLSADTGLYHETTNHNCNGVYSSIGCKIGGNATSAKVAKDNHDSFIDGGHLGYDGLLGTDSHRTTQREAALTKFRLKRKDRCYEKKVRYQSRKRLAEQRPRVKGQFVRQVHSDHPVSDLGGDS 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g03109 697 MobiDBLite consensus disorder prediction 206 237 - -
Spst9g03109 697 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 422 IPR045279 GO:0009736
Spst9g03109 697 MobiDBLite consensus disorder prediction 509 571 - -
Spst9g03109 697 MobiDBLite consensus disorder prediction 439 477 - -
Spst9g03109 697 MobiDBLite consensus disorder prediction 439 471 - -
Spst9g03109 697 Gene3D - 35 262 - -
Spst9g03109 697 Pfam CCT motif 641 683 IPR010402 GO:0005515
Spst9g03109 697 MobiDBLite consensus disorder prediction 668 697 - -
Spst9g03109 697 ProSiteProfiles Response regulatory domain profile. 36 197 IPR001789 GO:0000160
Spst9g03109 697 MobiDBLite consensus disorder prediction 556 571 - -
Spst9g03109 697 SMART REC_2 82 193 IPR001789 GO:0000160
Spst9g03109 697 Pfam Response regulator receiver domain 102 191 IPR001789 GO:0000160
Spst9g03109 697 MobiDBLite consensus disorder prediction 668 682 - -
Spst9g03109 697 MobiDBLite consensus disorder prediction 541 555 - -
Spst9g03109 697 ProSiteProfiles CCT domain profile. 641 683 IPR010402 GO:0005515
Spst9g03109 697 MobiDBLite consensus disorder prediction 509 540 - -
Spst9g03109 697 SUPERFAMILY CheY-like 101 196 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g03109 Spst-Chr9 64825861 64830284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g03109 604 686 Response Regulator Gene Family AT5G24470 60.241 3.48e-21 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Spst9g03109 Response_reg 3.1e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g03109 K12130 - gmx:100779346 959.133