Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g03106 ATGGCTACTTTCTTTCTCTCATTCACATCTTCCTCGTTACTCTTATTCAACCACAACCTCCATACCCAATTAGGACCTACTCCCAAATCATTCCTTTCCTGTTCCAAGGCTACGACTTTTTCCTTCACCGCCTCGGCGGCCACGGTGGATAAAGTAAGGGTCGTTCACGGAGGAAAACACGTGGAGCAAGAAACGTTGAAGCAACCTAGACCAACCGAAGTCTACGTCTGCAACCTTCCTAGAAGCTGTGATGTACAACATCTACTTCATATGTTCAATCCTCATGGAACCGTACTCTCCGCTCAGATTTGCCGGAATGAGGAGACTGGTGAAAGCAGAGGGAGTGCTTATGTCACAATGGCATCTATTGACTCCGCAAGAAAAGCAATTGCTGAATTGGACGGATTGGATGTTGGTGGGCGCGAATTGTGGGTTAGATTTTCAGCTGAGATGAATCCCAAGAGGAGGAATCTTGATACAATGAACTCGTTACCGGTAAGAACTATATACTATGAAGGTCCTTATAAGTTGTATGTTGGGAATCTTTCCAAGTTTGCTAGGCCTGAAGACTTGAGGCAGCTTTTTGGTAGATTTGGTAATGTGACTAGTGTAAGGGTGTTGCAAGATATGAAACAAGGGAGACAAAGAGTCTATGCGTTTGTCTCTTATCTTTCAGAGAGAGAACGTGATGCAGCAAAGTCTCTCAATGGAACGGTATATCTATTCTACCTTATCACACTTTTTGATTCCAACTGTACTTTGTGGTCGTACACTAGAAGCTCTGTTCTGGTATGTATAACTGAGATTGATGCGAGAAACTTCCAGAGCTATAAAATGTCAGCGAGTGGAGTGGACCTACTGTGGAAAGGCCATCAAAATCGGGATTTATACCCTTAG 897 0.4381 MATFFLSFTSSSLLLFNHNLHTQLGPTPKSFLSCSKATTFSFTASAATVDKVRVVHGGKHVEQETLKQPRPTEVYVCNLPRSCDVQHLLHMFNPHGTVLSAQICRNEETGESRGSAYVTMASIDSARKAIAELDGLDVGGRELWVRFSAEMNPKRRNLDTMNSLPVRTIYYEGPYKLYVGNLSKFARPEDLRQLFGRFGNVTSVRVLQDMKQGRQRVYAFVSYLSERERDAAKSLNGTVYLFYLITLFDSNCTLWSYTRSSVLVCITEIDARNFQSYKMSASGVDLLWKGHQNRDLYP 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g03106 298 SMART rrm1_1 73 146 IPR000504 GO:0003723
Spst9g03106 298 SMART rrm1_1 176 248 IPR000504 GO:0003723
Spst9g03106 298 SUPERFAMILY RNA-binding domain, RBD 171 240 IPR035979 GO:0003676
Spst9g03106 298 PANTHER OS02G0815200 PROTEIN 34 238 - -
Spst9g03106 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 239 IPR000504 GO:0003723
Spst9g03106 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 143 IPR000504 GO:0003723
Spst9g03106 298 Gene3D - 158 241 IPR012677 -
Spst9g03106 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 150 IPR000504 GO:0003723
Spst9g03106 298 Gene3D - 48 157 IPR012677 -
Spst9g03106 298 SUPERFAMILY RNA-binding domain, RBD 66 157 IPR035979 GO:0003676
Spst9g03106 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 238 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g03106 Spst-Chr9 64820624 64822045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g03106 74 239 Eukaryotic Initiation Factors Gene Family AT3G16380 27.545 1.29e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g03106 - - pvu:PHAVU_009G258000g 371.703