Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g03103 ATGTGGAAGATCGATTCCAGCAATGTGAAAATGTCGGTTGCTGAAACTGCTTGTTCATACGCATCTCTCATCCTTCACGAGGAAGGAATCGCTGTCACTGCAGACAATATCGTCACATTGTTGAAAACCGCCAAGGTTCAGGTCGATTCTTTTTGGCCTCCGTTGTTTGCTAAACTTGCTGAGAAGAAAAATCTTGGCGATTTGATAGCAAATGCTGCCGGCGGTGGGGCACCAGTTGCTGTAGCAGCTGCCCCAGCTGCTGCCGCCGCAGGTGGAGGTGCTGCTGCAGCCGCTCCTGCTGCTGAAGAGAAAAAGAAGGAAGAACCTGAAGAAGAGAGTGACGATGATATGGGATTCGGCTTGTTCGATTAG 372 0.5 MWKIDSSNVKMSVAETACSYASLILHEEGIAVTADNIVTLLKTAKVQVDSFWPPLFAKLAEKKNLGDLIANAAGGGAPVAVAAAPAAAAAGGGAAAAAPAAEEKKKEEPEEESDDDMGFGLFD 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g03103 123 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 11 123 - -
Spst9g03103 123 Gene3D - 11 72 IPR038716 -
Spst9g03103 123 CDD Ribosomal_P1 15 122 - -
Spst9g03103 123 Hamap 50S ribosomal protein L12 [rpl12]. 16 123 IPR027534 GO:0003735|GO:0005840|GO:0006414
Spst9g03103 123 MobiDBLite consensus disorder prediction 108 123 - -
Spst9g03103 123 MobiDBLite consensus disorder prediction 95 123 - -
Spst9g03103 123 FunFam 60S acidic ribosomal protein P1 11 73 - -
Spst9g03103 123 Pfam 60s Acidic ribosomal protein 32 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g03103 Spst-Chr9 64806151 64808378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g03103 11 123 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 51.327 5.96e-35 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g03103 K02942 - gmx:100305677 129.413