Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g03090 ATGTCAGAACTTATGAAATGTTCTCATTCTTCAAATGCAGCCACGAGAAAGAAGAGGAGCAAAAACAAGAAGAGGTTCAGCGATGGACAAGTCAAATCATTGGAATCCATGTTTGCGACAGACTCCAGACTGGAACCCACCAAGAAATTGGAGGTGGCAAGAGAACTTGGCTTGCAGCCAAGACAAGTTGCCATTTGGTTTCAGAACAAGAGAGCACGATGGAAGCTGAAGCAGATTCAGCAAGACTACACTGTGCTTCGAGCCAATTATAAGACGTTGGATTCACAGTTTGATGCTCTCAACAAAGAGCACCAATCATTGTCAATACAGTTGCAGAAAATGAAAAATCGATTACAAAAGCCACTAGAACAAACTGAGAGTTTTAGTAAAGGACACAAAACAGCAAACAGCATGGAGAGTGAAACTGGGAATGGAGAGACCATCAAAAGAGAACAGGAGATGAAGCAGCCGAGCTTCTCAACAGAAAGATCAGAAGACTTGGTTTGTGGTGTTATCTCGGACTGTGACAGCAGAAAAGCAAAACAATACTTTGGTGTAGAAGATGATCCTTCCCTTCTGGGCCTTGTTGAGAACACTGATGGTTCTTTCACAACATATGAAGATTGGGGTTTGTTAGGATCAGATGATATCTCAGGCCAATTAACTAGCTATGATTATCAATGGTTGGACTTCTGGTCCTGA 702 0.4217 MSELMKCSHSSNAATRKKRSKNKKRFSDGQVKSLESMFATDSRLEPTKKLEVARELGLQPRQVAIWFQNKRARWKLKQIQQDYTVLRANYKTLDSQFDALNKEHQSLSIQLQKMKNRLQKPLEQTESFSKGHKTANSMESETGNGETIKREQEMKQPSFSTERSEDLVCGVISDCDSRKAKQYFGVEDDPSLLGLVENTDGSFTTYEDWGLLGSDDISGQLTSYDYQWLDFWS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g03090 233 FunFam Homeobox-leucine zipper protein ATHB-7 5 77 - -
Spst9g03090 233 Gene3D - 5 89 - -
Spst9g03090 233 CDD homeodomain 26 78 IPR001356 GO:0003677
Spst9g03090 233 MobiDBLite consensus disorder prediction 122 143 - -
Spst9g03090 233 MobiDBLite consensus disorder prediction 1 32 - -
Spst9g03090 233 Pfam Homeobox associated leucine zipper 77 119 IPR003106 GO:0006355|GO:0043565
Spst9g03090 233 ProSiteProfiles 'Homeobox' domain profile. 17 77 IPR001356 GO:0003677
Spst9g03090 233 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 17 158 IPR045224 GO:0003700
Spst9g03090 233 PRINTS Lambda-repressor HTH signature 57 73 IPR000047 GO:0003677
Spst9g03090 233 PRINTS Lambda-repressor HTH signature 48 57 IPR000047 GO:0003677
Spst9g03090 233 ProSitePatterns 'Homeobox' domain signature. 52 75 IPR017970 GO:0000981|GO:0006355
Spst9g03090 233 MobiDBLite consensus disorder prediction 144 160 - -
Spst9g03090 233 SMART HOX_1 19 81 IPR001356 GO:0003677
Spst9g03090 233 Pfam Homeodomain 21 75 IPR001356 GO:0003677
Spst9g03090 233 SUPERFAMILY Homeodomain-like 7 78 IPR009057 -
Spst9g03090 233 Coils Coil 76 117 - -
Spst9g03090 233 MobiDBLite consensus disorder prediction 122 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g03090 Spst-Chr9 64744030 64744902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g03090 1 233 Homeobox Transcription Factor Family AT2G46680 38.956 2.51e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst9g03090 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g03090 K09338 - gmx:100806279 268.47