Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g03077 ATGCTGGCTGGCTTTCAGATGGGAAGAGCTCCTTGTTGCTCCAAAGTTGGTTTGCACAGAGGTCCATGGACTCCTCGAGAAGATGCATTGCTCACTAAGTATATTCAAGCTCATGGCGAAGGCCAATGGAGATCACTGCCAAAAAGAGCTGGTCTTCTTAGATGCGGAAAAAGTTGCAGACTGAGATGGATGAACTATCTGAGACCAGATATAAAGAGAGGAAACATAACTCCAGAAGAAGACGATCTCATAATTAGAATGCATTCACTTTTAGGAAATCGATGGTCCCTCATTGCAGGAAGACTACCAGGAAGAACAGATAACGAGATAAAGAATTACTGGAATACCCATCTCAGTAAGAAGCTGAGAAATCAGGGAACAGATCCAAAGACACACCACAAGTTAACCGCAGCACCAGAGAAGAAAAAGGGCAAAAAGAAGAACAAGCAAAAGAATGAGAATAAGAAAGTGTTGACGCCAGAGAAAACCTTAGTTTATCTACCAAAAGCCATAAGGGTTAAGGCTTTGTCATGTCTACCCCGTACGGAGAGCACCTTCACCCTGGATTCGAATTCAGGTAGTGCATCAACGAGCCAAGAGAAAATTCAAAGCCCAGGAGAAGAAGCAAAAGAGGTAAACATGGTTTGGGGTGTTGGCAACGATGGAGACAATGGTGGTGGGGTTGGAATATTCTTTGGTGAAGAGCATGACCTAGTCAACAGCTCCTCGTACGTGGAATGCCATTCTGATGATGTTCACACTGATCATGGTACGCTAGAAAAGCTCTATGAAGAGTACTTGCAGCTCTTGAAGGATGAAGAGAAACCTGCAGACGAATTAGATTCTTTTGCTCAATCTTTATTGGTGTAG 870 0.4356 MLAGFQMGRAPCCSKVGLHRGPWTPREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLRNQGTDPKTHHKLTAAPEKKKGKKKNKQKNENKKVLTPEKTLVYLPKAIRVKALSCLPRTESTFTLDSNSGSASTSQEKIQSPGEEAKEVNMVWGVGNDGDNGGGVGIFFGEEHDLVNSSSYVECHSDDVHTDHGTLEKLYEEYLQLLKDEEKPADELDSFAQSLLV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g03077 289 FunFam Transcription repressor MYB5 77 162 - -
Spst9g03077 289 Gene3D - 20 72 - -
Spst9g03077 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Spst9g03077 289 CDD SANT 77 118 IPR001005 -
Spst9g03077 289 MobiDBLite consensus disorder prediction 187 207 - -
Spst9g03077 289 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Spst9g03077 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Spst9g03077 289 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Spst9g03077 289 Gene3D - 77 159 - -
Spst9g03077 289 SMART sant 19 69 IPR001005 -
Spst9g03077 289 SMART sant 72 120 IPR001005 -
Spst9g03077 289 Pfam Myb-like DNA-binding domain 73 118 IPR001005 -
Spst9g03077 289 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Spst9g03077 289 CDD SANT 22 67 IPR001005 -
Spst9g03077 289 MobiDBLite consensus disorder prediction 136 152 - -
Spst9g03077 289 MobiDBLite consensus disorder prediction 121 156 - -
Spst9g03077 289 FunFam Myb transcription factor 17 73 - -
Spst9g03077 289 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 200 - -
Spst9g03077 289 MobiDBLite consensus disorder prediction 187 203 - -
Spst9g03077 289 SUPERFAMILY Homeodomain-like 17 114 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g03077 Spst-Chr9 64689749 64691422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g03077 10 137 MYB Transcription Factor Family AT3G13540 73.438 6.11e-69 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst9g03077 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g03077 K09422 - gmx:778044 431.409