Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g03076 ATGGGTTTTCATGCTGATGAGGCAACGGCGAGTATGCAACATCAACCATGCGCAGCTTGCAGGATGTTACGCCGCAGATGTGACAGTAAGTGCGTACTTGCTCCATATTTCCCAACCGATGAGGTTGAGAATTTTGCTGCAGTGCATAGAGTGTTCGGTGCCAGCAACGTTATCAAAATGATTCAGATGGTTGAGGACACAAAGAGAGAGGATGCGGTTAAATCCATGGTGTACGAGGCCAAAGCAAGGCTTAGAGACCCAGTCTATGGGAGTGCTGGAGCAATTTATAAGTTACAAAAGATGATTGAGGAACTGAAGGCACAGCTGGATTCGATCAAAACAAGGGTGTCAGAGATGGGTGAACAAAAGGAGAAGCTGCTGAGTGTTGGTAACAACAAAGGTCCTCTATTTGGCGCCAATGACCCTATGTTCCATGGTTATGGTACTTTGTGGGAAGATTTTGATTCTTCTATGGTCTCAGATCCATTTGAATTTCCTGTAGAAGGTGGCTGGTTATACAGCAATATGTCAACATCTTCTGAAGAGAAGCAATCAGCCTCTGATTTTCAATCCACTGCCACGTGTCATTATCAAAAGCGTTCATTAAAACCTCTTTTGATTGATTTCCAGTGGGACCCACCAAACCGAAGCACGAACCAACCATTTGACAGAGACTGCATGATAAAAGAGATAATGCCGAAAACGGCGTCGCTGCGGTCCTAA 723 0.4495 MGFHADEATASMQHQPCAACRMLRRRCDSKCVLAPYFPTDEVENFAAVHRVFGASNVIKMIQMVEDTKREDAVKSMVYEAKARLRDPVYGSAGAIYKLQKMIEELKAQLDSIKTRVSEMGEQKEKLLSVGNNKGPLFGANDPMFHGYGTLWEDFDSSMVSDPFEFPVEGGWLYSNMSTSSEEKQSASDFQSTATCHYQKRSLKPLLIDFQWDPPNRSTNQPFDRDCMIKEIMPKTASLRS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g03076 240 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
Spst9g03076 240 Coils Coil 95 122 - -
Spst9g03076 240 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Spst9g03076 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g03076 Spst-Chr9 64682199 64683938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g03076 16 132 AS2 family AT1G07900 55.556 2.31e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst9g03076 LOB 3.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g03076 - - vra:106754025 251.906