Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g03070 ATGGACCATCAACCCCCACCCTGCTCCGACGACGACCCAACCGCCACAACCTCCACCGCGAAGTCCGGCACCCGCCACCCAGTCTACCGGGGTGTCCGCAAGCGCCGCTGGGGAAAATGGGTCTCCGAAATTCGGGAGCCGCGCAAGAAGAACCGCATATGGTTGGGGTCTTTTCCGGTGCCGGAGATGGCAGCGCGAGCGTACGACGTCGCCGCGTACTGCCTCAAGGGGCGGAAGGCGCAGCTCAACTTTCCCGACGAGGTGGACTCCCTGCCGCTTCCGTTATCCCGCACGGCCAGGGACATTCAGGCCGCCGCGGCCCAGGCGGCGCGCATGCTGAAAGCTGCCGGCAGTGACGAGAAAAGCAGCATTGCCGATGACGACGGAGACAGCGGCGGCGACGATTTTTGGGGTGAGATTGAGTTGCCGGAGCTGATGGACGGCGAGTACTGCTGGAGTTGCCCCGGAGGATTCTCGTGGACTTCCTCCGGCGACATCGTCGATTGGACGGTTGAGGAGCTTTCGCCGCATCAACCGTCGTTCCTGGCGTGTCTATAA 558 0.6362 MDHQPPPCSDDDPTATTSTAKSGTRHPVYRGVRKRRWGKWVSEIREPRKKNRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDEVDSLPLPLSRTARDIQAAAAQAARMLKAAGSDEKSSIADDDGDSGGDDFWGEIELPELMDGEYCWSCPGGFSWTSSGDIVDWTVEELSPHQPSFLACL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g03070 185 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Spst9g03070 185 CDD AP2 29 86 IPR001471 GO:0003700|GO:0006355
Spst9g03070 185 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Spst9g03070 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 124 - -
Spst9g03070 185 FunFam Ethylene-responsive transcription factor 2 27 86 - -
Spst9g03070 185 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Spst9g03070 185 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Spst9g03070 185 PRINTS Ethylene responsive element binding protein signature 67 87 IPR001471 GO:0003700|GO:0006355
Spst9g03070 185 MobiDBLite consensus disorder prediction 10 24 - -
Spst9g03070 185 MobiDBLite consensus disorder prediction 1 28 - -
Spst9g03070 185 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
Spst9g03070 185 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Spst9g03070 185 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g03070 Spst-Chr9 64644315 64644872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g03070 1 185 AP2-EREBP Transcription Factor Family AT1G01250 55.556 5.50e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst9g03070 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g03070 K09286 - gmx:100819971 301.597