Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g03067 ATGAAGGGTGACGCGGGTTTAGGGCGCGTGACGTGGGATGAGGAGGAGAAGGCCATGGTTGGAGCTGTTCTGGGTGGTCGAGCTCAGGAGTTTTTAACGACAAACTCTGTATCGAATGAGAGTGTTTTAATGGCGGTTGGGAGCGACGAGGGGCTTCAGAACAAGCTTTCGGATCTGGTGGAGCGTCCCAACTTCTCCAATTTCAGCTGGAACTACGCGATTTTCTGGCAGCTCTCTCAGTCAAAATCCGGTGAGTGGGTTCTAGGTTGGGGAGACGGGTGCTGCAGGGAGCCCAACGAGGAAGAAGAGGGTGCGGTGAGAGGCACGCTGAGGCTTCTTCGCGTGGACGAGGAGATGCAGCAGAGGATGAGGAAGAGGGTGTTGCAGAAGCTGCACACCACTTTTGGTGGTTCGGATGAGGACAATTACGCTTTTGGCCTCGACCACGTGACCGACACGGAGATGTTCTTTCTTGCTTCCATGTACTTCTCTTTCCCTGGCGGGCATGGTGGCCCAGGTAAGTGCTTCGTCTCTGGGAAGCATTTGTGGCTTAAATCCGTGTCTGATTACTGCGTGCGTTCTTCCTTGGTTAAATCCGCCGGAATTCGGACTATTGTTTTGGTCCCTACTGATTTGGGAGTGGTGGAGTTGGGTTCCGTGAGAGTGTTACCCGAGAGTCTTGAACTCGTACAAGCCGTTAGATCTGTGTTCTCCACGCAGTGTCCGGCGTATCCTGGGGTGAACGTTAGCGCTGGTGGGAATGCGGTTTTTACTGGTTTGGCAATTGGGGATGGTAACAAGGTAGATGGGGGAGTTTCAATTCCCAAGCTTTTTGTGAATGCAATAGGCAATCGAACGCATTTCAGAGAGAAACTTGCTGTTAGAAAAATGGAGGATAACAGGCCTTGGGCAGGCCATGCCCTCCCCAATGGGAACAACCTCAACGACAACAAGGACAACATCAACAACGTTAGTTATCCCAATGCACGGAATGGTCTTCATGTTTCGGGTTGGGCAGTGAATTCGGGTGTGAGGCAGCCTGGTCCTGTTGAAGTTTTTGCTCCTAGGACTTCTCCGAGCAGTGTTGTTCCGGAGCTGGATAATTGTGTGAGACAGGATTTCAGGCTGATCAACAGCTATCAACCTCAAAGGCAGGTGCAAATGCAATTTGACTTTACCGGAGCTACTGCTAGGCCTTCTCCTGTGAGACCGGTTGTCGCAGATTCAGAGCTTTCTGATGTTGAGGTCTCTTGCAAGGAGGAACGACCCAGTGTTGTGGATGAAAGGAAACCCAGGAAGCGCGGTAGGAAGCCTGCTAATGGAAGGGAAGAACCCCTCAATCATGTGGAGGCGGAGAGGCAGCGACGTGAGAAGCTCAACCAACGGTTCTATGCATTGAGATCTGTCGTGCCTAATATCTCCAAGATGGACAAGGCTTCGTTGTTGGGTGATGCCATTGCCTATATCAACGATCTTCAGGCGAAAGTCAAGATCATGGAAGCTGAAAGAGAGAGGTTTGGAAGCACTTCAAAAGATGGATCAGTTTTGGAAGCTAACTCCAGATCTGAAAACCACAATCAAGAGAAAGAAGCTCCTGATGTTGATATTCAAGCAGCTCAAGACGAGGTCATTGTAAAGGTGAGTTGCCCTCTTGATACTCACCCTGTTTCCAAAGTAATTCAAACGCTCAAAGAGGCACAAATCAGTGTTGTAGAATCAAAGCTTGCTGCTGCAAATGATACTGTTTCCCACACATTTGTAATTAAGTCCCAAGGATCTGAACCACTTAAAAAGGACAAGTTGATTGCTCTTTTTTCCCCACCAGAATCCAATCCATTGCAGCCATTGTCATCAGTTGGATAA 1863 0.4944 MKGDAGLGRVTWDEEEKAMVGAVLGGRAQEFLTTNSVSNESVLMAVGSDEGLQNKLSDLVERPNFSNFSWNYAIFWQLSQSKSGEWVLGWGDGCCREPNEEEEGAVRGTLRLLRVDEEMQQRMRKRVLQKLHTTFGGSDEDNYAFGLDHVTDTEMFFLASMYFSFPGGHGGPGKCFVSGKHLWLKSVSDYCVRSSLVKSAGIRTIVLVPTDLGVVELGSVRVLPESLELVQAVRSVFSTQCPAYPGVNVSAGGNAVFTGLAIGDGNKVDGGVSIPKLFVNAIGNRTHFREKLAVRKMEDNRPWAGHALPNGNNLNDNKDNINNVSYPNARNGLHVSGWAVNSGVRQPGPVEVFAPRTSPSSVVPELDNCVRQDFRLINSYQPQRQVQMQFDFTGATARPSPVRPVVADSELSDVEVSCKEERPSVVDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINDLQAKVKIMEAERERFGSTSKDGSVLEANSRSENHNQEKEAPDVDIQAAQDEVIVKVSCPLDTHPVSKVIQTLKEAQISVVESKLAAANDTVSHTFVIKSQGSEPLKKDKLIALFSPPESNPLQPLSSVG 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g03067 620 FunFam Transcription factor bHLH13 436 510 - -
Spst9g03067 620 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 237 IPR025610 -
Spst9g03067 620 CDD bHLH_AtAIB_like 440 505 - -
Spst9g03067 620 SMART finulus 449 498 IPR011598 GO:0046983
Spst9g03067 620 Pfam Helix-loop-helix DNA-binding domain 447 493 IPR011598 GO:0046983
Spst9g03067 620 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 446 506 IPR036638 GO:0046983
Spst9g03067 620 MobiDBLite consensus disorder prediction 505 531 - -
Spst9g03067 620 Gene3D - 436 508 IPR036638 GO:0046983
Spst9g03067 620 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 443 492 IPR011598 GO:0046983
Spst9g03067 620 MobiDBLite consensus disorder prediction 418 454 - -
Spst9g03067 620 PANTHER MYC 39 603 IPR045084 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g03067 Spst-Chr9 64635714 64637576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g03067 7 620 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 46.914 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst9g03067 bHLH-MYC_N 1.2e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g03067 - - gmx:100801502 978.393