Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g03059 ATGTCTCACTCCGAAACCAAGAAGAAGAAGCATCAGCGCAGCACCGCCAACAACGAAGAAGAAAATCCAGCCAAAGACGATGGCTTGATGATCAAACCGCAGAGCTTCACCCCCCCAATCGACACCTCCCAATGGCCCATCCTCCTCAAAAATTACGACCGCCTCAACGTCCGCACGGGCCACTACACCCCCATCCCCTCCGGCTACTCCCCCCTCAAACGTCCCCTCGCCGAGTACCTCAAATACGGCGTCCTCAACCTCGACAAGCCCGCCAACCCCTCCTCACACGAGGTCGTCGCCTGGATCAAGCGCCTCCTCCGCGTCGAGAAGACCGGCCACTCCGGTACCCTTGACCCCAAGGTCACCGGAAACCTAATCGTCTGCATCGATCGCGCAACGCGCCTTGTAAAGTCCCAGCAGGGCGCTGGCAAGGAGTACGTCTGCATCGCCCGCCTTCATTCCGCCGTTCCCGACGTATCGAAGGTCGCACGCGCCCTCGAGACACTCACCGGCGCTGTCTTCCAGCGCCCTCCATTGATCTCCGCCGTTAAACGCCAGCTCCGCATTCGGACCATCTACGAAAGTAAGCTTCTTGAGTATGACCCTGATAAGCACTTGGTTGTTTTCTGGATTTCGTGTGAGGCTGGGACCTATGTTAGAACTATGTGTGTCCATTTGGGGTTGCTTCTTGGTGTGGGTGGTCATATGCAAGAACTTAGGAGGGTTCGCTCTGGGATAATGGGGGAGAAGGATAACATGGTGAGCATGCATGACGTGATGGATGCTCAGTGGGTTTATGATAATTATAGGGATGAGAGTTATTTGAGGAGGGTTGTTATGCCCTTGGAGGTTCTTTTGACTAGCTATAAGAGGCTGGTTGTTAAGGACTCTGCAGTTAATGCTATTTGCTATGGTGCTAAGTTGATGATTCCTGGGTTGCTTAGGTTTGAGAATGATATTGATGTTGGGGAGGAGGTTGTGCTTATGACTACCAAGGGGGAGGCTATTGCGCTTGGGATTGCTGAGATGACTACTGCTGTTATGGCCACTTGTGATCATGGGGTTGTCGCCAAAATCAAGAGGGTTGTCATGGATAGGGATACTTATCCAAGGAAATGGGGTTTGGGACCTAGGGCTTCCATGAAGAAGAAGCTTATTTCTGAAGGAAAGCTGGATAAGCATGGGAAGCCCAATGAGAAGACTCCCCAGGAGTGGCTTAGGAATCTGGTTTTGCCTACTGGTGGCGATAGTGTGATTGCGGGTATGGCTGCTGCACCAGAACCTGAGAATGACAAGGTCAAGGCCGATGGAGATGGTGAAGGGCGAAAGAGGAAGAAGCAGGAAAGCACAGATAGCCCGGTTTCGGTCCCTGCTAAGAAGGTGAAAGTAGACGTAGAAGAGGTTAAGGTAAAGAAGGTAGCTGATGAGGTTGAAGCTGACGACAAGAAAGAGAAGAAGAAGAAAAAGAAGAAGGATAAGGAAAACAACGAAGTGGCCTCTTCAGATGAGGAGAAAAGTGAGAAAAAGAAGAAGCACAAGAATAAGGTTGAAGATGGTTCACCGGAGTTAGACAAGTCTGAGAAGAAAAAGAAGAAGAAGAAAGACAAAGAAGCAGCCGCTGAAATTAGCAACGGAAAGGAGGATGACAGTAATGCTGATAAGAGTGAAAAGAAGAAGCATAAGAAAAAGAAAAACAAAGATGCCGAGGAAGAATAG 1716 0.5012 MSHSETKKKKHQRSTANNEEENPAKDDGLMIKPQSFTPPIDTSQWPILLKNYDRLNVRTGHYTPIPSGYSPLKRPLAEYLKYGVLNLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDKHLVVFWISCEAGTYVRTMCVHLGLLLGVGGHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNYRDESYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLISEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGMAAAPEPENDKVKADGDGEGRKRKKQESTDSPVSVPAKKVKVDVEEVKVKKVADEVEADDKKEKKKKKKKDKENNEVASSDEEKSEKKKKHKNKVEDGSPELDKSEKKKKKKKDKEAAAEISNGKEDDSNADKSEKKKHKKKKNKDAEEE 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g03059 571 Pfam PUA domain 290 362 IPR002478 GO:0003723
Spst9g03059 571 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 5 554 IPR004802 GO:0006396
Spst9g03059 571 SUPERFAMILY Pseudouridine synthase 42 287 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Spst9g03059 571 Pfam TruB family pseudouridylate synthase (N terminal domain) 103 219 IPR002501 GO:0006396
Spst9g03059 571 Gene3D PUA domain 42 373 IPR036974 GO:0003723
Spst9g03059 571 SMART pua_5 290 364 IPR002478 GO:0003723
Spst9g03059 571 Pfam DKCLD (NUC011) domain 42 99 IPR012960 -
Spst9g03059 571 Gene3D Pseudouridine synthase 75 281 - -
Spst9g03059 571 CDD PUA_Cbf5 288 362 - -
Spst9g03059 571 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 49 374 IPR004802 GO:0006396
Spst9g03059 571 ProSiteProfiles PUA domain profile. 289 364 - -
Spst9g03059 571 MobiDBLite consensus disorder prediction 429 450 - -
Spst9g03059 571 MobiDBLite consensus disorder prediction 11 27 - -
Spst9g03059 571 FunFam H/ACA ribonucleoprotein complex subunit CBF5 75 281 - -
Spst9g03059 571 MobiDBLite consensus disorder prediction 1 38 - -
Spst9g03059 571 SUPERFAMILY PUA domain-like 289 370 IPR015947 -
Spst9g03059 571 SMART DKCLD_2 41 99 IPR012960 -
Spst9g03059 571 MobiDBLite consensus disorder prediction 460 556 - -
Spst9g03059 571 CDD PseudoU_synth_hDyskerin 81 263 - -
Spst9g03059 571 NCBIfam uncharacterized domain 2 285 361 IPR004521 GO:0003723
Spst9g03059 571 MobiDBLite consensus disorder prediction 419 571 - -
Spst9g03059 571 Pfam tRNA pseudouridylate synthase B C-terminal domain 220 286 IPR032819 -
Spst9g03059 571 Coils Coil 476 511 - -
Spst9g03059 571 Coils Coil 551 571 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g03059 4 462 NAC Transcription Factor Family AT3G57150 83.836 0.0 755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g03059 K11131 - gmx:100806355 882.478