Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g03058 ATGAATGTCTTCTCTCTTCCCGATCCAACCCTTTCCTCTGAAATGGGTCTGCATCATCTCACAAACTTGATGACCCCATTGCCAGAACTTTGTGACTCACTCTGTCATGTGACGGAGTTCGAGCCTTGTTCATCAGATTGCAAAGTTTGCCTCAAGATCTGCTTCAACAACCCCCAATACCCTAATTATGATTCTCCTCCAACGCTGCTGCCGCCACCACAACTTCCTCCTTTCAATCTAGATAGCGGTGGCGCATATGAATCAAGCAGCCACAAAATCGCCACCTATTTGTTCCTTGCTCTTGCTATTCTAACTGCTGCGTTCTTTGTCGTTTGTTGTCGCACCATATACACCAGGTTCAGCTCAAGGAGGAGGGTATCGTCAAGGCACCACCAACAGAACACTGGTGATGATGATTTTGTTGATGAAGAGCATGGACCTGTGGTGGACCACCCCATATGGTATATTCGCACCCTTGGGCTTCAGCAATCAATTATCAATGCCATCACAGTTTGTAGGTATAAGAAAGGAGAGGGTTTGATTGAAGGAACCGAGTGTGCTGTTTGCTTGAGTGAGTTTCAAGAGGATGAGAATCTCAGGCTTTTGCCTAAATGCCATCATGCTTTTCATTTACCTTGTATTGATACCTGGCTTAGGTCTCATACCAATTGTCCCATATGCCGGGCTCCCATTGTTTCTGACCTTGCAACTGCTAAATTGGAGTCTACTTTTGTTGATTCAAATTCCTTTGGACATACCCATGTGGAAATTTTGGAGAATAGTGTTCTTGATTCTGAATTAGGGAATAGGCCAGAGGAAGAAGGCCAAGTGGAGGTTGAAGATGGATTTAGGGTTTGTGAAACTAAAACCCTTGTTGAAGAGGTGCCAAGCATTCTTCCTAGAAGATCTGTTTCTCTGGATTCCTTTTCTGTTGCAAATATCCATCGTGCTCTTGCAACAGTAGGATCTAATGGTAACTCAAAAAGAGTGCTGAGAGGCGTGGATGATGCTGATGCTGCTTCTTCCAAAGGGGGTTTTGGAAACGATTTGGCAACTACTTCCAAAGGTAGTTCTTCTTTCAGGTTAACTAGGTATCTGCAAGGTGCTCCTAGTTCTTCAATGAAAAGGTCACAATCCTACAATGGAAAGTACCTTCTATCCTGGTACGGTCGCAATCAGAAGAAGCCAAATGCTCCTCTGAGAAGAACCGAGTAA 1215 0.4436 MNVFSLPDPTLSSEMGLHHLTNLMTPLPELCDSLCHVTEFEPCSSDCKVCLKICFNNPQYPNYDSPPTLLPPPQLPPFNLDSGGAYESSSHKIATYLFLALAILTAAFFVVCCRTIYTRFSSRRRVSSRHHQQNTGDDDFVDEEHGPVVDHPIWYIRTLGLQQSIINAITVCRYKKGEGLIEGTECAVCLSEFQEDENLRLLPKCHHAFHLPCIDTWLRSHTNCPICRAPIVSDLATAKLESTFVDSNSFGHTHVEILENSVLDSELGNRPEEEGQVEVEDGFRVCETKTLVEEVPSILPRRSVSLDSFSVANIHRALATVGSNGNSKRVLRGVDDADAASSKGGFGNDLATTSKGSSSFRLTRYLQGAPSSSMKRSQSYNGKYLLSWYGRNQKKPNAPLRRTE 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g03058 404 ProSiteProfiles Zinc finger RING-type profile. 186 228 IPR001841 -
Spst9g03058 404 SUPERFAMILY RING/U-box 180 236 - -
Spst9g03058 404 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 89 235 IPR044675 -
Spst9g03058 404 CDD RING-H2_EL5-like 185 228 - -
Spst9g03058 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 235 IPR013083 -
Spst9g03058 404 SMART ring_2 186 227 IPR001841 -
Spst9g03058 404 FunFam RING-H2 finger protein ATL54 161 234 - -
Spst9g03058 404 Pfam Ring finger domain 185 228 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g03058 Spst-Chr9 64578864 64581952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g03058 93 232 C3H Transcription Factor Family AT1G72220 57.241 1.41e-47 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g03058 - - vun:114186636 642.499