Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g03052 ATGGAAGATAGCCTTGGAGGGAGTTCCTCTAAGGACAACTGCGGCATCAAGGAACAAGACCGGTTGCTGCCAATAGCCAATGTTAGTCGGCTCATGAAGCAGATTTTGCCACAGAACGCGAAAATCTCGAAGGAAGCGAAGGAAACAATGCAAGAATGTGTGTCGGAGTTCATAAGCTTTGTCACAAGTGAAGCTTCTGAGAAGTGCAGAAAGGAGAGGAGAAAAACTGTGAATGGTGATGACATTTGCTGGGCTTTGGCAACGCTAGGCTTTGATGACTATGCTGCACCAATCAGAAGGTACTTGCACAGATATAGAGAGATTGAGGTAGACCATAATAACAAGGCCAATCATCAAGAAAGAGGGATCAATAATCCTCAAGAGAGGGATGAACTATGCAAATTGCGATAG 411 0.4477 MEDSLGGSSSKDNCGIKEQDRLLPIANVSRLMKQILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAAPIRRYLHRYREIEVDHNNKANHQERGINNPQERDELCKLR 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g03052 136 SUPERFAMILY Histone-fold 19 120 IPR009072 GO:0046982
Spst9g03052 136 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Spst9g03052 136 Gene3D Histone, subunit A 11 134 IPR009072 GO:0046982
Spst9g03052 136 MobiDBLite consensus disorder prediction 116 136 - -
Spst9g03052 136 FunFam Nuclear transcription factor Y subunit B-3 11 134 - -
Spst9g03052 136 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Spst9g03052 136 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Spst9g03052 136 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Spst9g03052 136 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 121 IPR027113 GO:0001228|GO:0006355|GO:0016602
Spst9g03052 136 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 86 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g03052 Spst-Chr9 64544674 64545084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g03052 16 122 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.766 2.12e-57 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Spst9g03052 CBFD_NFYB_HMF 4.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g03052 K08065 - gmx:100794513 214.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g03052 9 64544674 64545084 Spst9g03052 9 64544674 64545084 ECH
Spst3g03063 3 80380440 80381229 Spst9g03052 9 64544674 64545084 PCT