Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g03042 ATGGAAGCTTACGGAGGGTTCATGGTCGACGAGAAAGCCGTTACGGTTGAGAACGCTTTTTTGGATTTTCTCAAAAGCTTCAAATCTAGCCAACGGAACGAGCTTCAGTACGAAGCGGAGATCGAAGTGATGAGAGTCAACGAATCCAACACCATGTTCATCGATTTCGCCCACGTCATCAAATTCAGCGACCTCCTCCAGCAGACTGTCTCTGATGAGTATTTGAGATATGAACCTTATTTGAAGAATGCTTGCAAGAGGTTTGTAATGGAACTCAAGCCGTCAGTTGTATCCGACGATGGCCCCAACAAGGATATCAACGTTGCTTTCTACAATATTCCCGTTATTAAGCGGTTAAGGGAATTGGGTACATCAGAAATCGGGAGGCTTGTATCTGTTACAGGAGTTGTGACGAGGACAAGTGAGGTTCGACCTGAACTTCTCCAAGGGACTTTCAAGTGCCTGGAATGCGGTAGTGTTATAAAGAATGTTGAACAGCAATTCAAGTATACTGAGCCAACAATCTGTTCAAATGCCACCTGTAGCAATCGAACAAGGTGGGTATTGCTTCGCCAAGATAGCAAATTTGCTGATTGGCAGAGGGTCAGAATGCAGGAGACATCCAAAGAGATACCTGCCGGCTCTCTTCCTAGGTCGTTGGATGTTATTCTTCGTCATGAGATCGTAGAACAGGCCAGGGCTGGTGATACGGTGATTTTCACAGGTACTGTTGTTGTTATACCCGACATAATGGCACTGGCATCTCCTGGAGAGAGATCAGAGTGTCGTCGTGATGCTTCTCAACGCAAGGGTTCTACCGCTGGAAATGAAGGTGTGAGTGGCCTCAAGGCCCTGGGAGTCAGAGACCTCTCCTATCGTCTAGCTTTTATAGCTAACTCTGTTCAGATTTGTGATGGTAGAAGAGAAATAGACATCAGGAACAGAAAGAAGGATGCTGAAGAAGATGATCAACAGTTTACTACGCAGGAACTGGATGAAATTCAACGAATGAGGATTACTCCAGATTTTTTCACCAAATTAGTTGAAAGTGTTGCTCCAACTGTTTTTGGTCATCCAGATATAAAGAGAGCTATCCTTCTTATGCTCATGGGTGGTGTTCACAAATTTACTCATGAAGGCATCAACCTTAGAGGAGACATAAATGTTTGCGTTGTTGGAGATCCCAGCTGTGCAAAATCTCAATTTCTTAAGTATACTTCAGGCATAGTTCCAAGATCTGTGTATACATCTGGGAAATCATCATCTGCTGCTGGCTTGACTGCAACTGTTGCCAAGGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGTGCTTTGATGCTTGCTGACAATGGCATCTGTTGCATTGATGAATTTGACAAGATGGACATCAGAGATCAGGTTGCAATTCACGAGGCCATGGAACAGCAGACTATTAGTATCACAAAAGCAGGAATACAAGCAACGCTTAATGCTCGTACTTCCATTCTTGCCGCTGCCAATCCTGCTGGAGGACGCTATGATAAATCTAAACCACTTAAGTATAACGTGGCTCTTCCACCAGCTATACTTTCAAGGTTTGATCTCGTTTATGTTATGATTGATGATCCAGATGATCAGACAGATTATCACATAGCTCATCATATTGTGAGAGTTCATCAAAAGCGAGAAGCTGCTCTTGCTCCAGCATTCACTACAGCAGAACTGAAGCGTTATATAGCATATGCAAAAACTCTTAAACCAAAGCTCACCTCAGATGCCAGAAAACTACTGGTAGACTCTTACGTTGCTCTTCGTAGAGGTGATACAAATCCAGGGAGTAGGGTTGCATATCGTATGACAGTTAGGCAGTTGGAAGCATTAATCAGGCTGTCAGAGGCCATTGCACGGTGTCATTTGGAAAATCAGGTGCAACCTCGCCATGTTCGTCTAGCAGTAAAACTTCTGAAAACATCCATAATAAGTGTGGAGTCCAGTGAAATCGATCTGTCTGAGTTTCAAGAAGAAAATCAGAATGACGGTGCAGTTGGTGGCGATGGAAATGATAATAATGGAGATGTTAATGATAGAGGTGGTGATGGAGATGATAATAATAGAGATGCTAATGATGGAAATCCAGCAGCCGATGGATCTAACTCCCGGGGGATGAAACAAGCTGATGGAAACGATGGAAATCCCGCAGATGGGTCTAAACCTCAAGCGAAAAAACTCGTTATAAGTGATGAATATTTTCAAAGAGTAACCAGCGCCCTTATCATGCGTCTTAGACAACATGAAGAGGCTGCTATGCAAGGAAATGGTTTGGCTGGAATGAGACAAAAAGATTTGATTCAATGGTACGTAGACCAACAGAACGAGAGAAATAACTATAGTTCGATGGAAGAAGTGACAGCTGAAATTTCTAAAATTAAAGCTATTATAGAGAGTTTAATTCGCAGAGAAGGTCATTTGATAGTGGTAGATGATGGGCAAGAGGCGGCGGCAGCTGAAGGAGGAGGCGCACCTAGAAATAACCGAATTTTAGCGGTGGCTCCCAATTATGTTATTGACTGA 2553 0.434 MEAYGGFMVDEKAVTVENAFLDFLKSFKSSQRNELQYEAEIEVMRVNESNTMFIDFAHVIKFSDLLQQTVSDEYLRYEPYLKNACKRFVMELKPSVVSDDGPNKDINVAFYNIPVIKRLRELGTSEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGSVIKNVEQQFKYTEPTICSNATCSNRTRWVLLRQDSKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFTGTVVVIPDIMALASPGERSECRRDASQRKGSTAGNEGVSGLKALGVRDLSYRLAFIANSVQICDGRREIDIRNRKKDAEEDDQQFTTQELDEIQRMRITPDFFTKLVESVAPTVFGHPDIKRAILLMLMGGVHKFTHEGINLRGDINVCVVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKREAALAPAFTTAELKRYIAYAKTLKPKLTSDARKLLVDSYVALRRGDTNPGSRVAYRMTVRQLEALIRLSEAIARCHLENQVQPRHVRLAVKLLKTSIISVESSEIDLSEFQEENQNDGAVGGDGNDNNGDVNDRGGDGDDNNRDANDGNPAADGSNSRGMKQADGNDGNPADGSKPQAKKLVISDEYFQRVTSALIMRLRQHEEAAMQGNGLAGMRQKDLIQWYVDQQNERNNYSSMEEVTAEISKIKAIIESLIRREGHLIVVDDGQEAAAAEGGGAPRNNRILAVAPNYVID 850
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Spst9g03042 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 654 IPR027417 -
Spst9g03042 850 Pfam MCM N-terminal domain 18 112 IPR027925 -
Spst9g03042 850 Coils Coil 793 813 - -
Spst9g03042 850 MobiDBLite consensus disorder prediction 664 736 - -
Spst9g03042 850 CDD MCM6 346 652 - -
Spst9g03042 850 MobiDBLite consensus disorder prediction 257 276 - -
Spst9g03042 850 MobiDBLite consensus disorder prediction 686 702 - -
Spst9g03042 850 Gene3D - 119 247 IPR012340 -
Spst9g03042 850 Pfam MCM P-loop domain 331 553 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst9g03042 850 FunFam DNA helicase 328 658 - -
Spst9g03042 850 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 10 800 IPR031327 GO:0003677|GO:0005524|GO:0032508
Spst9g03042 850 ProSitePatterns MCM family signature. 452 460 IPR018525 GO:0003677|GO:0005524|GO:0006260
Spst9g03042 850 SUPERFAMILY Nucleic acid-binding proteins 20 249 IPR012340 -
Spst9g03042 850 Gene3D - 8 115 - -
Spst9g03042 850 PRINTS Mini-chromosome maintenance (MCM) protein family signature 472 485 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst9g03042 850 PRINTS Mini-chromosome maintenance (MCM) protein family signature 496 508 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst9g03042 850 PRINTS Mini-chromosome maintenance (MCM) protein family signature 444 458 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst9g03042 850 PRINTS Mini-chromosome maintenance (MCM) protein family signature 384 399 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst9g03042 850 PRINTS Mini-chromosome maintenance (MCM) protein family signature 523 531 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst9g03042 850 Pfam MCM AAA-lid domain 568 653 IPR041562 -
Spst9g03042 850 Gene3D - 324 672 IPR027417 -
Spst9g03042 850 Pfam MCM6 C-terminal winged-helix domain 735 849 IPR041024 -
Spst9g03042 850 MobiDBLite consensus disorder prediction 704 719 - -
Spst9g03042 850 FunFam DNA helicase 146 197 - -
Spst9g03042 850 ProSiteProfiles MCM family domain profile. 343 549 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst9g03042 850 Pfam MCM OB domain 119 247 IPR033762 -
Spst9g03042 850 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 278 299 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Spst9g03042 850 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 219 230 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Spst9g03042 850 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 74 86 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Spst9g03042 850 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 116 128 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Spst9g03042 850 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 166 183 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Spst9g03042 850 Gene3D - 146 197 - -
Spst9g03042 850 FunFam DNA helicase 733 850 - -
Spst9g03042 850 Gene3D - 733 850 - -
Spst9g03042 850 SMART mcm 115 654 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Spst9g03042 Spst-Chr9 64475753 64481061 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g03042 1 850 Core DNA Replication Machinery Family AT5G44635 71.267 0.0 1274
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g03042 K02542 - gmx:100787290 1457.58