Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g03004 ATGGCTGAAACACACTCTCACACTCCCTTAGGTGCACCCACGATCAGCCCCATCACAACAACTAAACCATGCACCCCACCAGAACACAGCATGAATATGATGGTTGTTTTGGCAGCCATAGTGTGTGCCTTGCTTTGTGCTCTTGGTCTCAACACAATGTTGCAATGTGTGTTCCAATGTGCCAATCGTGTTCTCACGGAACCCCTTCAATGGATAGCCTCAAGAAGACTCAATTCTGGCCTCAAGAGGAGAGAAATGGTGGCTTTGCCAACCTCAACTTACACCCATTCTGGTGGCTCTCCGTCTAACTGTGCCATTTGCTTAGCAGAGATCTCTGATGGGGAGAAGATAAGGTTCCTCCCAAACTGCAATCACCATTTTCATGTTGATTGCATTGATAAGTGGCTGCTTTCTCACTCTTCTTGCCCAACTTGTAGGAACTTGCTCAAGTCTAGTGATTCACTTTACTCTTTGCGTATTGTAGTATCTTAG 492 0.4614 MAETHSHTPLGAPTISPITTTKPCTPPEHSMNMMVVLAAIVCALLCALGLNTMLQCVFQCANRVLTEPLQWIASRRLNSGLKRREMVALPTSTYTHSGGSPSNCAICLAEISDGEKIRFLPNCNHHFHVDCIDKWLLSHSSCPTCRNLLKSSDSLYSLRIVVS 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g03004 163 CDD RING-H2_EL5-like 104 146 - -
Spst9g03004 163 MobiDBLite consensus disorder prediction 9 23 - -
Spst9g03004 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 151 IPR013083 -
Spst9g03004 163 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Spst9g03004 163 SMART ring_2 104 145 IPR001841 -
Spst9g03004 163 MobiDBLite consensus disorder prediction 1 23 - -
Spst9g03004 163 Pfam Ring finger domain 103 146 IPR001841 -
Spst9g03004 163 SUPERFAMILY RING/U-box 103 152 - -
Spst9g03004 163 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 28 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g03004 Spst-Chr9 64139257 64139748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g03004 32 149 C3H Transcription Factor Family AT3G10910 45.312 7.29e-32 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g03004 - - gmx:100803003 270.781