Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02990 ATGGCGACAACGTCGGTGGTGCCGGCGAACCGCCGCAGGGCGGTGAACGCGGCCGAGGAGATGGACTTCGAGACCACGGAGGGTGTGAAGGCCATCGCGAGCTTCGAAGAGATGGGGATAAAGGACGATCTGCTTCGCGGAATCTACCAGTACGGCTTCGAGAAACCCTCAGCCATTCAGCAACGGGCTGTCACGCCAATCATCCAGGGCCGTGATGTCATCGCTCAGGCCCAATCTGGAACCGGCAAAACCTCCATGATTGCCCTCACCGTTTGCCAGGTCGTCGATACCTCCGTCAGAGAGTTAGGGTTTTTTAGTGGTACGGTGTGTGGAGAGGTGTTAAGTCGCGGTTTCGTCGTGGTTTTGATATTCCTGGAAATTGTGGCCAAACAATGGATTTTAGTAGTTCAGGCCTTGATACTGTCACCAACAAGGGAACTGGCCTCACAGACTGAAAAGGTTATATTGGCCATTGGGGATTTCATTAACATACAAGCACATGCTTGCATTGGAGGTAAAAGTGTGGGTGAAGATATTAGGAAACTTGAGTATGGAGTACATGTTGTCTCTGGAACTCCTGGCCGAGTCTGTGACATGATCAAAAGGAGAACATTGCGCACAAGAGCTATCAAGATGCTAGTTCTGGACGAATCTGATGAGATGTTGAGCAGAGGATTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCACCGGACCTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATACTGGAAATGACAAACAAATTCATGACAGATCCTGTAAGGATCCTTGTAAAACGTGATGAATTGACATTGGAGGGCATCAAGCAATTTTTTGTTGCAGTCGAAAGGGAGGAATGGAAGTTTGATACCCTGTGTGATCTTTATGATACCCTCACTATCACTCAAGCTGTTATATTCTGTAACACTAAGCGAAAGGTGGACTGGCTAACTGAAAAAATGCGTAACAATAATTTCACTGTCTCATCAATGCACGGTGACATGCCTCAGAAAGAAAGAGATGCTATTATGGGAGAATTTCGTGCTGGAACAACCAGAGTTCTAATAACAACTGATGTTTGGGCCCGTGGTCTTGATGTGCAGCAGGTTTCTCTAGTTATCAATTATGACCTTCCAAATAATCGAGAGCTTTACATTCATCGGATTGGTCGATCTGGACGTTTCGGACGAAAGGGTGTTGCAATAAATTTTGTGAAGAGTGATGACATCAAGATTTTGAGAGACATTGAACAGTACTACAGTACTCAGATTGATGAAATGCCAATGAATGTTGCTGATCTTATATAA 1323 0.452 MATTSVVPANRRRAVNAAEEMDFETTEGVKAIASFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSGTGKTSMIALTVCQVVDTSVRELGFFSGTVCGEVLSRGFVVVLIFLEIVAKQWILVVQALILSPTRELASQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKMLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02990 440 CDD SF2_C_DEAD 280 410 - -
Spst9g02990 440 SMART helicmild6 320 401 IPR001650 -
Spst9g02990 440 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 279 440 IPR001650 -
Spst9g02990 440 Pfam Helicase conserved C-terminal domain 293 401 IPR001650 -
Spst9g02990 440 SMART ultradead3 52 283 IPR014001 -
Spst9g02990 440 CDD DEADc_EIF4AIII_DDX48 35 269 - -
Spst9g02990 440 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 30 423 - -
Spst9g02990 440 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 64 268 IPR014001 -
Spst9g02990 440 Pfam DEAD/DEAH box helicase 58 254 IPR011545 GO:0003676|GO:0005524
Spst9g02990 440 Gene3D - 17 271 IPR027417 -
Spst9g02990 440 Gene3D - 272 440 IPR027417 -
Spst9g02990 440 FunFam Eukaryotic initiation factor 4A-III 274 440 - -
Spst9g02990 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 423 IPR027417 -
Spst9g02990 440 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 33 61 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02990 Spst-Chr9 64040148 64043728 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02990 23 440 Eukaryotic Initiation Factors Gene Family AT3G19760 82.057 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02990 K13025 - gmx:100795032 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02990 9 64040148 64043728 Spst9g02990 9 64040148 64043728 ECH