Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02972 ATGTCCGACACCACCTCTACCATGACAGATAGCACCAACCATTCTGACTATTCGGGAGTTGTGATTGCTATTGCCATAGTTGTTCTGATTGTGAAGATTAGTCTTTTCTGTTGGTGCATTAACAAATTTAAGGCTAATGGTGGTTTTAGATCATATAATCAAACAGGAACGCCTGTCAAAAAATTTATGACACTCACTATGGATAAATTTCTGAATGACATGGAAAGGGAGAAGCCAATCAGGTTCACTGATCAGCAGCTAAGGATTGCGACTGATAATTACACTTATCTCTTGGGGTCAGGAGGTTTTGGTGCTGTTTACAAAGGAAGTTTTAGCGATGGAACCATCATAGCTGTGAAAGTTCTACGTGGGAGTTCTGACAAAAGAATTGATGAACAGTTTATGGCAGAAGTGGGTACCATTGGTAAAGTCCATCATCTCAATCTAGTTCGTCTATATGGGTTTTGCTTTGAAAGACACTTGAGAGCACTGGTTTATGAGTACATGGTGAATGGTGCGCTTGAGAAGTACCTGTTTCATGAAAGCACGATCTTATCATTTGAAAAACTCCATGAGATCTCAATTGGTACAGCAAGAGGCATTGCTTACTTGCATGAAGAGTGTCAACAGAGAATAATCCACTATGATATTAAACCAGGAAATATTCTCTTGGATAGGAATTTTTGTCCTAAAGTTGCAGACTTTGGTTTGGCCAAGCTTTGCAACAGAGACCATACTCATATAAGCATGACTGGGGGTAGAGGGACTCCTGGTTATGCGGCCCCTGAACTTTGGATGCCATTTCCTGTAACTCACAAGTGTGATGTTTACAGCTTTGGCATTCTGTTATTTGAAATCATTGGCAGGAGAAGAAACCATAACGATAACCTTCCAGAAAGTCAGGCTTGGTTTCCAAAGTGGGCTTGGGAAAAATTTGATTCTGAACAAGTGGGGGAGGTGATAACTGCCTGTGGGATAGAGGACAAAGATAGGGAGATTGCAGAAAGAATTGTTAAGGTAGCATTTTCTTGTGTTCAGTATAGGCCAGGAGCGAGACCTGTAATGAGTGCTGTGGTGAAAATGTTGGAAGGTTCAGTTGAAGTTCCTAAACCTCCGAACCCATTTCAACACCTGATTGGTTGGGTTCCACCCACTCAACCGGTACATGCATCGCAGGCTGATACTGACACAACTATCTGTTCTGACTCGTCAGCATTGTTAGCCAAATCTGTCCCTGTACTTGCCACACCTGTTGTGACCAAGTGCGAGATTGAATTAGCTTCTGTCTAA 1290 0.4202 MSDTTSTMTDSTNHSDYSGVVIAIAIVVLIVKISLFCWCINKFKANGGFRSYNQTGTPVKKFMTLTMDKFLNDMEREKPIRFTDQQLRIATDNYTYLLGSGGFGAVYKGSFSDGTIIAVKVLRGSSDKRIDEQFMAEVGTIGKVHHLNLVRLYGFCFERHLRALVYEYMVNGALEKYLFHESTILSFEKLHEISIGTARGIAYLHEECQQRIIHYDIKPGNILLDRNFCPKVADFGLAKLCNRDHTHISMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGILLFEIIGRRRNHNDNLPESQAWFPKWAWEKFDSEQVGEVITACGIEDKDREIAERIVKVAFSCVQYRPGARPVMSAVVKMLEGSVEVPKPPNPFQHLIGWVPPTQPVHASQADTDTTICSDSSALLAKSVPVLATPVVTKCEIELASV 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02972 429 SMART serkin_6 92 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g02972 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Spst9g02972 429 ProSiteProfiles Protein kinase domain profile. 92 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g02972 429 Gene3D Phosphorylase Kinase; domain 1 66 168 - -
Spst9g02972 429 FunFam serine/threonine-protein kinase PBS1-like 63 168 - -
Spst9g02972 429 Gene3D Transferase(Phosphotransferase) domain 1 169 370 - -
Spst9g02972 429 FunFam Putative receptor-like protein kinase 169 370 - -
Spst9g02972 429 Pfam Protein tyrosine and serine/threonine kinase 97 362 IPR001245 GO:0004672|GO:0006468
Spst9g02972 429 ProSitePatterns Protein kinases ATP-binding region signature. 98 120 IPR017441 GO:0005524
Spst9g02972 429 SUPERFAMILY Protein kinase-like (PK-like) 82 389 IPR011009 -
Spst9g02972 429 PANTHER OS07G0415500 PROTEIN 16 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02972 Spst-Chr9 63807908 63809301 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02972 81 398 Receptor kinase-like Gene Family AT5G38280 39.877 4.84e-80 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Spst9g02972 PK_Tyr_Ser-Thr 6.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02972 - - gmx:100305451 660.603