Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02963 ATGGAGTGGGACAGCAATTCCGATCTCAGTGGCGACGACGACGCCGTTTCCTTCCTCCTCAACGACGATGATGACGACGTCGTCGGGCCCCTTCCCTTTCCCGTCCTCCAAACCGCGCCGTGCGGCTTCGTCGTAACCGACGCGCTCGAGCCCGACCACCCTATCATATACGTCAACGCTGTTTTCGAGATGGTCACCGGCTACCGCGCAGAAGAAGTGCTCGGTCGCAACTGGAGACAGGGGGACTGGTTGCATTTCATATCTAAGGATAAGCTCAATTATGGTTTAAGTGATGAACAAGAGGAACCAAAACTGGATTGGAGCCATTTTAAGGAATGTTGTCAACTTTCAGTGTCCAGTGCTTATAGCGTTGATAGCCGCTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCAACTGTTGTTTCAGAGATTAGAAGATGCCTTGACGAAGGGGTTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAGATTGCGTCTGACGCCTATATATGGAGATGATGAGATAACTCATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCCCTTCCGGGTTCTACGCCAAAGGAATCTACCAAATCATCAGATCGGTTCCATTCTGTGCTTTCCTCATTGAATCCTCTTCCAGTAGGGGACCGTAATGTTACTCGAGGAGTTTGTGGGATATTGCAATTAAGTGATGAGGTATTGTCTCTCAAGATACTTGCTTGTTTAACTCCAAGAGATATTGCATCAGTTGGTTCTGTTTGTAGGCGATTGTATGAGCTAACAAAAAATGAAGATCTTTGGAGAATGGTGTGCCAAAATGCTTGGGGCAGTGAGACTACACGTGTTTTAGAAACTGTGCCTGGTGCTAGGAGACTTGGATGGGGTCGATTAGCAAGAGAATTGACCACTCTTGAAGCAGCAGCATGGAGGAAACTGACTGTTGGAGGTGCGGTTGAACCTTCACGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGATACCTTTGTACTGGATCTCAATTCTAGTAATCCTGAGTGGCAACATGTCCAGGTGAGTTCTCCTCCCCCTGGTCGGTGGGGCCACACACTATCTTGTGTTAATGGTTCTCGTTTGGTTGTATTTGGAGGCTGTGGAACGCAGGGCTTGCTTAATGATGTGTTTGTTCTAGACCTGGATGCAAAGCCTCCAACCTGGCGTGAAATTTCTGGATTAGCACCTCCACTTCCGAGATCTTGGCATAGCTCCTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGTGCTGATTCTGGAGTACTCTTGAGTGATACTTTCCTCCTTGATCTGTCGATGGAGAAACCTGTCTGGAGAGAGATTCCAGTTGCATGGACTCCACCTTCGCGGCTGGGTCACACACTATCCGTTTATGGTGGTAGGAAAATACTAATGTTTGGGGGTCTGGCCAAGAGCGGGCCCCTGCGATTTCGCTCCAGTGATGTATTCACGATGGATTTAAGTGAGGAGGAGCCATGCTGGAGATGTGTAACGGGGAGTGGAATGCCAGGTGCTGGAAATCCTGGAGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTGAGCCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCAGGCCTTCATTCTGCCTCCCAGCTTTACATACTAGATCCGACTGATGAAAAGCCTACATGGAGAATCCTAAACGTACCTGGGCGCCCTCCAAGATTTGCTTGGGGACATAGTACTTGTGTTGTTGGAGGGACAAGAGCTATTGTACTGGGTGGTCAAACTGGGGAGGAATGGATGCTAAGTGAGCTCCATGAACTTTCCTTGGCAAGTTCTGTCATCTAA 1983 0.4801 MEWDSNSDLSGDDDAVSFLLNDDDDDVVGPLPFPVLQTAPCGFVVTDALEPDHPIIYVNAVFEMVTGYRAEEVLGRNWRQGDWLHFISKDKLNYGLSDEQEEPKLDWSHFKECCQLSVSSAYSVDSRFLQCRGPFAKRRHPLVDSTVVSEIRRCLDEGVEFQGELLNFRKDGSPLMNRLRLTPIYGDDEITHVIGIQFFTEANIDLGPLPGSTPKESTKSSDRFHSVLSSLNPLPVGDRNVTRGVCGILQLSDEVLSLKILACLTPRDIASVGSVCRRLYELTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGTQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02963 660 Pfam F-box-like 256 294 IPR001810 GO:0005515
Spst9g02963 660 FunFam Adagio protein 1 245 292 - -
Spst9g02963 660 FunFam Putative LOV domain-containing protein 526 659 - -
Spst9g02963 660 Pfam PAS domain 40 80 IPR000014 -
Spst9g02963 660 Pfam PAS domain 144 197 IPR000014 -
Spst9g02963 660 Pfam Galactose oxidase, central domain 406 455 - -
Spst9g02963 660 NCBIfam PAS domain S-box protein 52 105 IPR000014 -
Spst9g02963 660 CDD PAS 39 80 IPR000014 -
Spst9g02963 660 Gene3D PAS domain 33 208 - -
Spst9g02963 660 Pfam Galactose oxidase, central domain 344 394 - -
Spst9g02963 660 Gene3D - 525 658 IPR015915 GO:0005515
Spst9g02963 660 SUPERFAMILY PYP-like sensor domain (PAS domain) 50 196 IPR035965 -
Spst9g02963 660 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 32 657 - -
Spst9g02963 660 FunFam Putative LOV domain-containing protein 321 525 - -
Spst9g02963 660 SUPERFAMILY F-box domain 240 309 IPR036047 GO:0005515
Spst9g02963 660 SUPERFAMILY Galactose oxidase, central domain 331 645 IPR011043 -
Spst9g02963 660 Gene3D - 244 292 - -
Spst9g02963 660 CDD F-box_AtADO-like 247 293 - -
Spst9g02963 660 Gene3D - 322 524 IPR015915 GO:0005515
Spst9g02963 660 Pfam Kelch motif 568 615 IPR011498 GO:0005515
Spst9g02963 660 Pfam Kelch motif 501 552 IPR011498 GO:0005515
Spst9g02963 660 ProSiteProfiles PAS repeat profile. 35 77 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02963 Spst-Chr9 63753918 63760834 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02963 35 197 AGC Kinase Gene Family AT5G58140 29.878 3.78e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02963 K12115 - gmx:100802828 1170.61