Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02956 ATGGAGAAGGCCAAACTATTTATGCTTACTAGGAAGGGAGAGGAAGCCTGTAAACTTGCAAGTTGTTCGGAACAAGAATATGGAAGATTGAAACACGGCAAGTGTGAAGTCGATGAATGCTGTCCCCAGAAGAGGACAAAATCTTGGGATAATTTGGTGCCGTACTTTGTTCAAGCTTTTACATACATATTCCGGTGTAAAGACAAAGAAAGATTCACCCTGGACATGCTCCAAAGCAAGGCCATATTTTATGTTCATCAAGATGTAGAGGAAAACCTCATGTCAAAGAAGAAAGTTGGAGAAAGAAAGTACGATGTTTTTGTTAGCTTTCATGGGGAGGACATCAGACGAGTGTTTCTTAGTCATTTGGTTGAGGGTTTCAAAAGTAAGAATATAAAAGTGTTTGTTGATGATGAAATTGAGAGGGGAGAAGAAATATGGCCATCACTTGTTGAAGCAATCGAAGGATCATCCATTTCATTGATCATATTCTCACAAGGCTATGCTTCTTCTCATTGGTGTCTAGATGAAGTGGTGAAAATTATTGAATGCAGAGAGAAAGATGGACAGATTGTAATCCCTGTTTTCTATTGCATAGAACCCAAAGATGTAAGAGATCAATTGGGGAGTTACAAGAATGCATTTGACGAACATGAAATCAAATATGAGAGGAAGGTCCCAATCTGGAGACATGCCATGAATAAATCCACACTCTTAGCAGGAATTCAGTCATCAAAATTTCGGGATGACGCGGAGTTACTTAAAAATATTGTCGATGTTGTGTTGACCAGTCAACCTGGAGGTGTCCTATACAAAGGATATTTAATGAAGTGTGGTGTGGAAATAAAAAATGTTGGGATATGTGTAGTAAGATTAAGAGGAAAACTGAATGGAGTCTTCTTAAGAGGTTCTGGAATGGATTTCAATCACCGGAAACTTCAAATTTCAGCTATGGGACAAATTTTAGAGAACTGTACGAGCTTGCTGAAGTGCTCACGAGAAGTGTTGAAGTTACAGGGCTTCATGAGCTTCACACAAGGGACAAGTGGAGGCTGTGGTGAAGCTGAAAGCCAAATCGCTCTGACTGGGGAGTCTCTTCCAGTTACTAAGCATCCAGGGCAAGAAGTGTTCTCTGGCTCAACTTGCAAACAAGGAGAAATTGAAGCCGTTGTGATTGCAACTGCCATTGGGAACTTCTGCATCTGTTCCATTGCTGTTGGTATGCTAACTGAGATCATAGTGATGTACCCAATTCAGCACCGCAAGTACAGGGATGGAATTGACAACCTGTTGCTCTCTCAGCAAGGAGCCATCACCAAGAGAATGACTGCCATAGAAGAAATGGCAGGCATGGATGTCCTTTGCAGTGACAAAACAGGAACACTCACCCTCAACAAACTCACTGTTGACAAGAACTTAGTTGAGGTCATTGCCAAGGGCGTGGACAAGGATCATGTGATCCTTCTAGCTGCCAGGCTGCCAGAACTGAAAACCAGGATGCCATACATGCTGCCATTATTGGAATGTTTGCTGATCCTAAAGAGATGTGTTTTAGTTGCTTTGATGCTTGGAAAAAGTGGTGTTACCTTCCATCCTTGTTTTTCATATGCTTCTGAGTCCTTCCTCAAACAGGTTGTTAATGTTTAA 1647 0.4141 MEKAKLFMLTRKGEEACKLASCSEQEYGRLKHGKCEVDECCPQKRTKSWDNLVPYFVQAFTYIFRCKDKERFTLDMLQSKAIFYVHQDVEENLMSKKKVGERKYDVFVSFHGEDIRRVFLSHLVEGFKSKNIKVFVDDEIERGEEIWPSLVEAIEGSSISLIIFSQGYASSHWCLDEVVKIIECREKDGQIVIPVFYCIEPKDVRDQLGSYKNAFDEHEIKYERKVPIWRHAMNKSTLLAGIQSSKFRDDAELLKNIVDVVLTSQPGGVLYKGYLMKCGVEIKNVGICVVRLRGKLNGVFLRGSGMDFNHRKLQISAMGQILENCTSLLKCSREVLKLQGFMSFTQGTSGGCGEAESQIALTGESLPVTKHPGQEVFSGSTCKQGEIEAVVIATAIGNFCICSIAVGMLTEIIVMYPIQHRKYRDGIDNLLLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVIAKGVDKDHVILLAARLPELKTRMPYMLPLLECLLILKRCVLVALMLGKSGVTFHPCFSYASESFLKQVVNV 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02956 548 Gene3D - 432 451 - -
Spst9g02956 548 Gene3D - 394 430 - -
Spst9g02956 548 Pfam E1-E2 ATPase 358 398 - -
Spst9g02956 548 SUPERFAMILY Toll/Interleukin receptor TIR domain 97 235 IPR035897 -
Spst9g02956 548 Gene3D - 452 466 IPR023214 -
Spst9g02956 548 ProSiteProfiles TIR domain profile. 102 236 IPR000157 GO:0007165
Spst9g02956 548 ProSitePatterns E1-E2 ATPases phosphorylation site. 457 463 IPR018303 -
Spst9g02956 548 PANTHER TMV RESISTANCE PROTEIN N-LIKE 97 246 - -
Spst9g02956 548 SUPERFAMILY Calcium ATPase, transduction domain A 358 397 IPR008250 -
Spst9g02956 548 FunFam Disease resistance protein (TIR-NBS-LRR class) 100 265 - -
Spst9g02956 548 Pfam TIR domain 103 261 IPR000157 GO:0007165
Spst9g02956 548 Gene3D - 467 493 IPR023299 GO:0000166
Spst9g02956 548 Gene3D - 358 393 - -
Spst9g02956 548 SMART till_3 103 239 IPR000157 GO:0007165
Spst9g02956 548 Gene3D - 99 266 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02956 Spst-Chr9 63698919 63708411 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02956 358 491 Primary Pumps ATPases AT4G30190 65.591 1.32e-63 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02956 K01535 - gmx:100804422 231.876