Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02919 ATGCGGGATGCGGAGAATTTAAATAAGAAAGGATCAAGAAAATCCTGTTATTCAAAGGAACAGATTAAGTCCAAGCTATTTTCATCAAAATTCAAAACAAGTAGTACAAGACACCGAAGGAAGGAACACAAAGTGAAGTCAAAATCTCATAAACAGAGAGTTGGTACGAACACATCAAGGAAAAGAGTTGCTGATGCTTCTATCAAGGCACCACTTAAGGACTCGTCAAATAAAAAAGTGATTATTAATAAAACTCTCCATAAAAGTGATGTGAACTCTTCACAGAAGGTGTCTTCAACAAAACTACAAAGAAGAAAAATTCCTCATAGTTCTAGAAAAGAGGGCAATGGTGTGGATGAAGAGGCAAAGATTAAAAAACATAAGAGGAGAAAGAAGAATAGACAAGGGGACAGTATGGATCTTGATGATGCTTCACGCCTTCGAAGGAGAACAAGATACCTCTTAATCAAAATGAAGCTGGAGCAAAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAAAGTCGGGAGAAGATTAGGCCAGAAAAGGAGCTACTAAGAGCAAAGAAACAGATTTTAAAATGTAAACTCAGCATTCGTGATGTTATACGCCAGCTGGATTCTCTTAGCTCTGTGGGTAGCATTGAAGATTCTGTTATTGCTCCAGATGGCTCTGTTTATCATGAACATATATTCTGTGCCAACTGCAAACTACATGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGCACATGCAATCGTGCTTTTCACCAAAGATGTCTCAATCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGATCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATACTAGAGTCAACAAATGCCCATCTTGGGACTCAATTCTCCTTGGACAGTAGTTGGCAGGATGTATTCAAGGAAGAGGCTACTATGCCTGATGGTCATATTGCATTACTTAATCCAGAAGAAGAATGGCCATCAGATGATCCTGAAGATGATGATTACAATCCAGAGAGGAAAGAAGGCAGCCCCAGCATCAACACAGAAGGAGGTGATGACAATGCATCCAATGATTCAACCAGTTCTTCGAGTTTGTGGTCTTTGAATGGGGAATGTCCTCCGTTAGGTGAAGACCTTAGTCATGAATATTATTCTGTTAACAGCGTCATTGATTCTGATGAATCTGGCGAAATAGCATGTGGCCGTAGGCAGCGTAAAGCAGTTGACTACAAGAAACTGTATGATGAAATGTTTGGGAAGGATGCCCCATCATGTGAACAAGTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAATCTGATGCTGTTAATACTCTTATGACTCTGCATGAAAGTGAGAATAAATATCCTAATAATGAGAGCAATGAAAGAAAAAGAGAGGGTTCTTCAGGCTTGCCAATAAGAAGATCTTGTTTCAGGATTCCACTTGATGCAGTTGAGAAACTTCGCCAAGTTTTTGCAGAGAACGAGCTTCCTCCAAGATCCGTGAAGGAAGGTCTTTCAAAAGAGTTGGGACTAGATCCTGAAAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTCAGCACTTAAAACCAGAAGGTATCAATCAGAAGAACAGCTTCAGAGTTTCACATCTCCGATATCAAAGGATTCTACGTCTCCAAACGTGGAGAAAGATGAGTTTATGAAATCAAAAGTCTCCAAAATTACTGTGATTCAGGAGGATGGTAAAAACATCACAGGTAAAGAGAAAAATAAATTATGTAACAGTCTTATGAAGAAAAGGAAGCAAAAACCATCTCCACCACTGTCAATAGAAAACACCAACAAGGACTCTATGGAGGTCAGTGATGATGTAAAGTTGAAGAAACTGCTGAAAGAAAAGAAAAGAATGGTAAATTTTATACATGAAGGAGACTCTCTGACAGCAGAGTTGGAATTTGAGATACTCAGCAAACTGAAGAGTAAAGTAGATAGCATGAAGCAAAAACTAAAGGAAGTTCAAAATTGCAGAGCAAAGGGATCAAATGAACCCTCTATTATGTATGTACCCACAGCCCAATTAAGGGAAAAGGTTGAGTAA 2130 0.3901 MRDAENLNKKGSRKSCYSKEQIKSKLFSSKFKTSSTRHRRKEHKVKSKSHKQRVGTNTSRKRVADASIKAPLKDSSNKKVIINKTLHKSDVNSSQKVSSTKLQRRKIPHSSRKEGNGVDEEAKIKKHKRRKKNRQGDSMDLDDASRLRRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELLRAKKQILKCKLSIRDVIRQLDSLSSVGSIEDSVIAPDGSVYHEHIFCANCKLHEAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCKFCECKIEILESTNAHLGTQFSLDSSWQDVFKEEATMPDGHIALLNPEEEWPSDDPEDDDYNPERKEGSPSINTEGGDDNASNDSTSSSSLWSLNGECPPLGEDLSHEYYSVNSVIDSDESGEIACGRRQRKAVDYKKLYDEMFGKDAPSCEQVSEDEDWGPGKRKRREKESDAVNTLMTLHESENKYPNNESNERKREGSSGLPIRRSCFRIPLDAVEKLRQVFAENELPPRSVKEGLSKELGLDPEKVSKWFKNARYSALKTRRYQSEEQLQSFTSPISKDSTSPNVEKDEFMKSKVSKITVIQEDGKNITGKEKNKLCNSLMKKRKQKPSPPLSIENTNKDSMEVSDDVKLKKLLKEKKRMVNFIHEGDSLTAELEFEILSKLKSKVDSMKQKLKEVQNCRAKGSNEPSIMYVPTAQLREKVE 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02919 709 MobiDBLite consensus disorder prediction 350 378 - -
Spst9g02919 709 MobiDBLite consensus disorder prediction 1 20 - -
Spst9g02919 709 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 12 707 - -
Spst9g02919 709 CDD homeodomain 495 542 IPR001356 GO:0003677
Spst9g02919 709 MobiDBLite consensus disorder prediction 431 486 - -
Spst9g02919 709 Gene3D - 489 557 - -
Spst9g02919 709 SMART PHD_3 234 287 IPR001965 -
Spst9g02919 709 SUPERFAMILY Homeodomain-like 490 559 IPR009057 -
Spst9g02919 709 MobiDBLite consensus disorder prediction 32 57 - -
Spst9g02919 709 MobiDBLite consensus disorder prediction 109 124 - -
Spst9g02919 709 MobiDBLite consensus disorder prediction 607 629 - -
Spst9g02919 709 ProSiteProfiles Zinc finger PHD-type profile. 232 289 IPR019787 -
Spst9g02919 709 ProSiteProfiles 'Homeobox' domain profile. 487 547 IPR001356 GO:0003677
Spst9g02919 709 ProSitePatterns Zinc finger PHD-type signature. 235 286 IPR019786 -
Spst9g02919 709 Pfam PHD-finger 234 289 IPR019787 -
Spst9g02919 709 MobiDBLite consensus disorder prediction 549 576 - -
Spst9g02919 709 SMART HOX_1 489 551 IPR001356 GO:0003677
Spst9g02919 709 MobiDBLite consensus disorder prediction 1 71 - -
Spst9g02919 709 CDD PHD_PRHA_like 234 286 IPR045876 -
Spst9g02919 709 MobiDBLite consensus disorder prediction 431 459 - -
Spst9g02919 709 FunFam pathogenesis-related homeodomain protein-like 226 286 - -
Spst9g02919 709 Coils Coil 666 686 - -
Spst9g02919 709 MobiDBLite consensus disorder prediction 471 486 - -
Spst9g02919 709 Pfam Homeodomain 500 542 IPR001356 GO:0003677
Spst9g02919 709 FunFam pathogenesis-related homeodomain protein 489 553 - -
Spst9g02919 709 MobiDBLite consensus disorder prediction 86 101 - -
Spst9g02919 709 MobiDBLite consensus disorder prediction 549 568 - -
Spst9g02919 709 MobiDBLite consensus disorder prediction 329 379 - -
Spst9g02919 709 MobiDBLite consensus disorder prediction 83 143 - -
Spst9g02919 709 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 283 IPR013083 -
Spst9g02919 709 SUPERFAMILY FYVE/PHD zinc finger 226 291 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02919 Spst-Chr9 63310905 63316493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02919 139 555 Homeobox Transcription Factor Family AT4G29940 58.314 3.94e-158 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Spst9g02919 Homeodomain 7.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02919 - - gmx:100816912 1103.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02919 9 63310905 63316493 Spst9g02919 9 63310905 63316493 ECH
Spst3g03461 3 84391367 84395785 Spst9g02919 9 63310905 63316493 PCT