Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02916 ATGACGACGGAGCAGACCAAATTCAGCGTGTTGTGCAGTCTCTTCACGTGGACGCAGCGCAGCAAGTCCGCGGCGAAGAAGCGCGCCAAGTTCCGTAAGTTCCTCGACGCCTTCTGCATTGACCGCAACTTCTTCCCCGCCGTTCGCCTCATTCTCCCCAATCTCGATCGCGAGCGCGGTTCCTACGGCCTCAAGGAGTCCGTCCTCGCCACCTCCCTCATCGACGCCCTCGGCATCTCCCGCGATTCTCCCGATGCCCTTCGCCTCGTCAATTGGCGCAAGGGCGGGGCTGCCACCGGCGCCACCGCTGGGAATTTCGCCCTCGTCGCCGCTGAGGTGCTGCACCGCAGGCAAGGGACCGCTTCGGGTGGGTTGACAATAAGGGAGTTGAATGAGTTGCTTGACCGGTTGGCTTCCGGTGAAAACAGGGCTGAGAAAATTTTGGTTCTTTCTACCCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGATCTAAAGCTGGGAATTAGTGAAAAAAGCATTTTTCATGAGTTCCACCCTGATGCAGAAGACTTGTTTAATGTCACCTGTGACTTAAAATTAGTATGTGAAAAGCTTAGGGATCGGAATCAACGTCATAAGCGGCAGGATATTGAAGTTGGAAAAGCAGTACGCCCCCAATTAGCTAAGAGAGTTGCTAATGCAACTGAAGCATGGAAGAAGGTTTACTTTGCTAACCCTTTAATATCAGTCACTTATGCCCCGACCAAAGCACTTGTCATTCATATCCCTTTCCATGGCTACGGGACATGGAGATTGAGAACATATTGCAATCTTCATGGGAAAGAAGTGGTTGTTGAGTGCAAATTTGATGGTGACCGAATTCAAATTCATAAAAATGGAACTGAGATACAGTTTTTCTCAAGGCAGGGTATTCTTGTTTCCACCCCACCTTCCCTGAACTTTATTGATCATTCTGAATATGCACATGCAATGTCAGAAATCATAATACAAAATGTTCTTGTAGATAGGTGCATCCTTGATGGTGAAATGTTGGTGTGGGACACATCCGCAAGACGTTTTGCCGAGTTTGGCTCAAATCAGGAAATAGGCATGTACTTTAATATGCCAAGGCAGCAAGAGATGGACTTGATAGTGAAAGACAGCGTGATTCACCAAACGTTGAAGGAACGACATGAGATTTTATGTAAAATTGTTACGCCAATGAAGGGACGTTTGGAAATTTTGGTACCTAATACTGGTATCAACAGTCATCTTTCTTCAGGTGAACCTTGTTGGTCATTTATTGCTCAAAATGTTGATGAAGTTGAGAGGTTTTTCAAGGAAACCATTGAAAATAGAGATGAGGGAATTGTTCTAAAAGACCGCAGCTCCAAATGGGAACCTAGTGATCGTAGTGGAAAGTGGCTAAAATTGAAGCCCGAGTACATTCAAGCTGGCTCTGATCTCGATGTACTTATCATAGGTGGCTACTATGGCTCTGGACGACGTGGAGGACAGGTTGCTCAATTCTTGGTTGGCCTTGCAGAACGTCCATCCCCAAATACACACCCGAAGAGATTTATCTCCTTTTGCAGAGTTGGCACTGGACTCTCTGATGAGGAGCTTGATGTTATAGTGACCAAACTACAACCTTACTTCAGAAAATATGAATATCCAAAGAAGAGGCCACCAAGTTTTTATCAGGTAACTAATCATTCAAAAGAAAGACCTGATGTGTGGGTTGATAGCCCTGAAAAATCAATTATTCTGTCTATTACCAGTGATATCCGAACTATAGAATCTGAGGTGTTTGCTGCACCTTACTGTCTGAGATTTCCTCGGATTGATAGGGTGAGATATGACAAAGCATGGAATGAATGCCTTGATGTTCAATCATTTATAGAACTAGTACATTCTAGCAATGGTACCACACAGAGGGATACAGAATATGGCAGCAAGCAGTACAGTAAACCAAAAAGAATGAAATCCTCCACTAGGGGAGAGAAGAAAAACATCTCCATTTTTACCTTGACATGTGCAGACTTCGCCAATGTGCCTCCATCACATTCTCTGGAGTCCTTGCACAAAATAATTGTTGAGAATGGGGGAACTTTTTCAATGAATTTGAATAAGTCAGTCACACATTGTGTCGCTGCAGACAGCAAGGGCTTTAAATTTGAAGCAGCAAAGCATCATGGTGATATCATTCATTATGCTTGGGTACTAGATTGCTATGAACAAAAGAAACTTGTCTGCTTACAGCCTAAGTATTTCCTTTTCATATCTGAACTGACAAAGAAGAAGTTACAAGAGGAAATTGATGAGTTCTCAGACTCTTTCTACTTGGACCTTGATCTTGAAGACATCAAGAAGCTCTTAAGCAATATTCGTAGGTCTGAAGATGTCAGCACTGTCGATCATTACAGGAAAAAATACTGCCCAAAGAATAAGTGGAAAGGAGATTGGTATTTTATATTGCAACTCTCCTTGAGAAGATTCAAGCTTGAAGTTCTCATGGGTGGTGGAAAAGTTACCTCTAGTCTTACTTCTGCAACCCATTTAGTGATCTTTCTTGTGCCAGGATATCGGATTGACTTTGAACAAATACAGAGTAGTTTCACTTCATTAGAAAGAAAATTTCTCCAAAGCAAGAGGTTGCATATAGTTAAATCCCAGTGGTTGGAAGATTGTTCAGACAGCTGTGAAAGATTACCAGAAGACTCCTACAGTTTGAAACCCTGGGGAATAGAAGAGTCAACTGCTGAAGCTTGGTGCTTTAATATTGATATAATATACGCGTTCCTCACAAGTGCTGTAACCTGTAACTATGGTGTTATGCCAAGGTCTTGGGGGCATTTGCACTAG 2871 0.4323 MTTEQTKFSVLCSLFTWTQRSKSAAKKRAKFRKFLDAFCIDRNFFPAVRLILPNLDRERGSYGLKESVLATSLIDALGISRDSPDALRLVNWRKGGAATGATAGNFALVAAEVLHRRQGTASGGLTIRELNELLDRLASGENRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAWKKVYFANPLISVTYAPTKALVIHIPFHGYGTWRLRTYCNLHGKEVVVECKFDGDRIQIHKNGTEIQFFSRQGILVSTPPSLNFIDHSEYAHAMSEIIIQNVLVDRCILDGEMLVWDTSARRFAEFGSNQEIGMYFNMPRQQEMDLIVKDSVIHQTLKERHEILCKIVTPMKGRLEILVPNTGINSHLSSGEPCWSFIAQNVDEVERFFKETIENRDEGIVLKDRSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGQVAQFLVGLAERPSPNTHPKRFISFCRVGTGLSDEELDVIVTKLQPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFAAPYCLRFPRIDRVRYDKAWNECLDVQSFIELVHSSNGTTQRDTEYGSKQYSKPKRMKSSTRGEKKNISIFTLTCADFANVPPSHSLESLHKIIVENGGTFSMNLNKSVTHCVAADSKGFKFEAAKHHGDIIHYAWVLDCYEQKKLVCLQPKYFLFISELTKKKLQEEIDEFSDSFYLDLDLEDIKKLLSNIRRSEDVSTVDHYRKKYCPKNKWKGDWYFILQLSLRRFKLEVLMGGGKVTSSLTSATHLVIFLVPGYRIDFEQIQSSFTSLERKFLQSKRLHIVKSQWLEDCSDSCERLPEDSYSLKPWGIEESTAEAWCFNIDIIYAFLTSAVTCNYGVMPRSWGHLH 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02916 956 ProSiteProfiles BRCT domain profile. 843 913 IPR001357 -
Spst9g02916 956 SUPERFAMILY BRCT domain 831 915 IPR036420 -
Spst9g02916 956 Gene3D DNA ligase/mRNA capping enzyme 274 483 - -
Spst9g02916 956 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 4 210 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Spst9g02916 956 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 288 296 IPR016059 GO:0003909
Spst9g02916 956 Pfam DNA ligase N terminus 7 187 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Spst9g02916 956 Pfam BRCT domain, a BRCA1 C-terminus domain 686 757 IPR001357 -
Spst9g02916 956 FunFam DNA ligase 2 219 - -
Spst9g02916 956 MobiDBLite consensus disorder prediction 654 668 - -
Spst9g02916 956 CDD OBF_DNA_ligase_IV 488 632 - -
Spst9g02916 956 SUPERFAMILY BRCT domain 682 762 IPR036420 -
Spst9g02916 956 Pfam ATP dependent DNA ligase domain 227 481 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Spst9g02916 956 Pfam ATP dependent DNA ligase C terminal region 505 624 IPR012309 GO:0003910|GO:0006281|GO:0006310
Spst9g02916 956 FunFam DNA ligase 484 645 - -
Spst9g02916 956 ProSiteProfiles BRCT domain profile. 694 760 IPR001357 -
Spst9g02916 956 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 183 482 - -
Spst9g02916 956 ProSitePatterns ATP-dependent DNA ligase signature 2. 457 481 IPR016059 GO:0003909
Spst9g02916 956 PANTHER DNA LIGASE 4 4 917 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Spst9g02916 956 CDD Adenylation_DNA_ligase_IV 215 486 IPR044125 GO:0005524
Spst9g02916 956 ProSiteProfiles ATP-dependent DNA ligase family profile. 373 518 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Spst9g02916 956 Gene3D - 484 645 IPR012340 -
Spst9g02916 956 FunFam DNA ligase 687 801 - -
Spst9g02916 956 SUPERFAMILY Nucleic acid-binding proteins 489 640 IPR012340 -
Spst9g02916 956 MobiDBLite consensus disorder prediction 645 668 - -
Spst9g02916 956 Gene3D - 1 219 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Spst9g02916 956 Gene3D BRCT domain 809 913 IPR036420 -
Spst9g02916 956 Gene3D BRCT domain 686 800 IPR036420 -
Spst9g02916 956 NCBIfam ATP-dependent DNA ligase 62 639 IPR000977 GO:0003910|GO:0005524|GO:0071897
Spst9g02916 956 SMART BRCT_7 817 903 IPR001357 -
Spst9g02916 956 SMART BRCT_7 671 750 IPR001357 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02916 283 641 Core DNA Replication Machinery Family AT1G08130 25.521 2.11e-20 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02916 K10777 - gmx:100816002 1501.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02916 9 63274963 63289690 Spst9g02916 9 63274963 63289690 ECH