Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02904 ATGAGTAGTTTCCTGAACGGTGCTTCGCCGCGGCAGCAAATGGAAGAGAGTGACATCGAGGCTGGTCCCTCCACTCGCCGTTCCGCTGACCTTGACGACGGCGATTTCTCCGATCCGTTTGATATTGCCAGAACTAAGAATGCTTCTATTGAACGCCTCAGGCGCTGGAGGCAAGCAGCGCTTGTGCTTAATGCTTCTCGTCGATTTCGATATACCTTGGACTTGAAAAAAGAAGAAGAGAAGAAGCAAATATTGAGAAAGATTAGAGCACATGCACAAGCCATTAGAGCAGCTTATCTTTTCAAAGCAGCTGGTGGGGGGCCAGGAAGTGAACCTATTAAACCTCCTCCGCCTCCCTCTGCTGGTGAATTTCCAATTGGGCAAGACCAACTTGCTTCAATTTCAAGAGAGCATGACACTGCTGCTCTGCAACAAAATGGAGGGGTTGTAGGACTATCAAATTTGTTGAAAACCAATTTAGAGAAGGGAATTCATGGTGATGATGTTGATTTACTAATGCGGAGGAATATATTTGGTTCCAACGATTATCCTCGGAAGAAAGGAAGAAGTTTTCTGATGTTTATGTGGGATGCTTGCAAGGACTTGACCTTGGTTATTTTAATGGTAGCAGCAGCAGCTTCACTGGCTCTTGGGATAAAATCTGAGGGTATTAAGCAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCGAGAACTAAATGAAGAGAAGAGAAATATACACCTGGAGTTTTTATTTGAATTTGTGCATGAGAAGGTTATTAGAGGTGGTAGAAGGGTTGAGATCTCTATATATGATATTGTTGTTGGGGACGTTATACCCCTTAATATTGGTAACCAGGTCCCTGCTGATGGAATTCTGATCACTGGTCACTCTCTTGCAATTGACGAATCAAGTATGACTGGGGAGAGCAAAATTGTCCATAAAGATTCTAAGGATCCTTTTCTTATGTCTGGATGTAAAGTTGCTGATGGCAGTGGCACTATGCTGGTCACTGGTGTTGGTATCAATACTGAATGGGGGCTACTAATGGCTAGCATCGCAGAAGATACAGGCGAAGAAACACCATTACAGGTTCGCTTAAATGGTGTAGCTACTTTCATCGGTATTGTTGGACTGGCTGTTGCTGTTGTCGTCCTGCTTGTGCTACTAATTAGATATTTCACTGGGCATACTGAAAACCCGCAAGGTGAGGCTCAATTTAAAGCTGGCACAACTAAAGTTGGTGATGCTATTGATGGTGCAATTAAGATAGTAACTGTTGCGGTCACTATCGTCGTGGTTGCAGTTCCTGAGGGGCTCCCATTAGCAGTTACTTTAACGCTGGCCTACTCGATGAGAAAAATGATGGAAGATAAAGCTTTGGTAAGGAGGCTTTCTGCCTGTGAGACTATGGGCTCTGCTACAACCATATGTAGTGATAAGACTGGCACATTGACAATGAATCTGATGACCGTGGTTGAGGCTTATGCTGGGGGTAAGAAAATTGACCCTCCTCACAAGTTGGAGAATACTATGCTTCGCTCGTTGCTCATTGAGGCTGTTGCGCAGAACACTAATGGTAGTGTTTATGCACCTGAGGGTGTTAATGATGTCGAGGTTTCTGGATCTCCAACAGAAAAGGCAATTTTGCAGTGGGGAATACAGCTTGGGATGGATTTTACGGCTGCAAGATCCAAATCATCAATTATTCATGTTTTCCCATTCAATTCAGAGAAAAAAAGAGGCGGTGTTGCGTTACAAATGGCTGACTCTAACATCCATGTACACTGGAAAGGTGCTGCTGAGATAGTCCTAGCCTGCTGTACAGGCTATATTGATGGAAATGATCAGCTGGTGGGGATGGATGAGGAGAAGATGGCATTTTTCAAAAAGGCTATTGAAGACATGGCTGCTGATAGTCTACGTTGTGTTGCCATTGCATATAGACCATATGAAAAGGAGAAGGTTCCAACTAATGAAGAACTACTTGCTCACTGGTCTTTACCAGAGGATGATCTTATTTTACTGGCTATTGTTGGTCTTAAGGATCCTTGTCGACCTGGTGTCAAGGATGCAGTGCTACTTTGTCAAAAGGCTGGCGTTAAGGTGAAAATGGTCACTGGTGACAATGTGAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTGGGTTCATATGCCGATGCTACAGAACCAAACATCATTGAAGGAAAAACTTTTCGTGGCTTGTCAGATGCACAGAGAGATGAAATTGCTGATAGGATATCGGTCATGGGGCGGTCATCTCCCAATGACAAACTATTGCTAGTACAATCATTGAGGAGGAAAGGTCATGTTGTTGCTGTAACTGGGGATGGAACAAATGATGCTCCTGCACTTCATGAGGCCGATATAGGTCTTGCAATGGGTATCCAAGGTACAGAAGTTGCCAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTAAAGGTTGTCAGATGGGGCCGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTAAATGTGGCCGCCCTAGTGATAAATGTTGTTGCTGCAGTTTCATCTGGTGATGTTCCACTAAATGCAGTGCAGCTTCTTTGGGTAAATCTTATTATGGACACTCTGGGAGCACTGGCCTTGGCAACTGAACCACCAACGGATCACCTCATGGATCGATCTCCAGTTGGTCGAAGGTCTGAAATTTTATTTTTTATGATTCTTATTGGAATTGACAAATTGTTTGCTTGCTTTTTCAGAGAACCTCTTATAACAAATATTATGTGGAGGAATTTGCTGATACAGGCAATGTACCAAGTGTCTGTCTTGCTTGTACTCAATTTCCGAGGTAGAAGCATACTAGGTTTGAGCCGAGACAACAATCAACATGCAATCAAAGTGAAGAACACTTTGATATTTAACGCATTTGTTCTCTGTCAAATCTTTAATGAATTTAATGCTCGAAAGCCAGATGAGTACAACATATTTAAAGGAGTCACGAGAAACTATCTCTTTATGGGTATAATTGGATTAACTGTTGTGCTTCAGATTGTCATCATTGAATTTCTGGGCAAGTTTACAAAAACAGTGAGACTTAATTGGAAGCAGTGGCTCATCTGTGTCATTATTGGATTGATTAGTTGGCCTCTTGCTGTGATTGGGAAATTGATCCCAGTGCCAACCACTCCTATCAATAACGTTTTTTCAAAATGTGGGCCTTCTAGAAAGAGGGAACCTGAGGAATCTCAATAG 3342 0.424 MSSFLNGASPRQQMEESDIEAGPSTRRSADLDDGDFSDPFDIARTKNASIERLRRWRQAALVLNASRRFRYTLDLKKEEEKKQILRKIRAHAQAIRAAYLFKAAGGGPGSEPIKPPPPPSAGEFPIGQDQLASISREHDTAALQQNGGVVGLSNLLKTNLEKGIHGDDVDLLMRRNIFGSNDYPRKKGRSFLMFMWDACKDLTLVILMVAAAASLALGIKSEGIKQGWYDGGSIAFAVILVIVVTAISDYKQSLQFRELNEEKRNIHLEFLFEFVHEKVIRGGRRVEISIYDIVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVHKDSKDPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASIAEDTGEETPLQVRLNGVATFIGIVGLAVAVVVLLVLLIRYFTGHTENPQGEAQFKAGTTKVGDAIDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMEDKALVRRLSACETMGSATTICSDKTGTLTMNLMTVVEAYAGGKKIDPPHKLENTMLRSLLIEAVAQNTNGSVYAPEGVNDVEVSGSPTEKAILQWGIQLGMDFTAARSKSSIIHVFPFNSEKKRGGVALQMADSNIHVHWKGAAEIVLACCTGYIDGNDQLVGMDEEKMAFFKKAIEDMAADSLRCVAIAYRPYEKEKVPTNEELLAHWSLPEDDLILLAIVGLKDPCRPGVKDAVLLCQKAGVKVKMVTGDNVKTAKAIAVECGILGSYADATEPNIIEGKTFRGLSDAQRDEIADRISVMGRSSPNDKLLLVQSLRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRSPVGRRSEILFFMILIGIDKLFACFFREPLITNIMWRNLLIQAMYQVSVLLVLNFRGRSILGLSRDNNQHAIKVKNTLIFNAFVLCQIFNEFNARKPDEYNIFKGVTRNYLFMGIIGLTVVLQIVIIEFLGKFTKTVRLNWKQWLICVIIGLISWPLAVIGKLIPVPTTPINNVFSKCGPSRKREPEESQ 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02904 1113 FunFam Calcium-transporting ATPase 9 plasma membrane-type 352 522 - -
Spst9g02904 1113 Pfam E1-E2 ATPase 277 476 - -
Spst9g02904 1113 Gene3D - 173 374 - -
Spst9g02904 1113 Gene3D - 197 1081 - -
Spst9g02904 1113 SFLD Haloacid Dehalogenase 480 856 - -
Spst9g02904 1113 Gene3D - 48 103 - -
Spst9g02904 1113 SUPERFAMILY HAD-like 496 909 IPR036412 -
Spst9g02904 1113 SUPERFAMILY Calcium ATPase, transduction domain A 278 371 IPR008250 -
Spst9g02904 1113 CDD P-type_ATPase_Ca_PMCA-like 174 958 - -
Spst9g02904 1113 Pfam haloacid dehalogenase-like hydrolase 495 818 - -
Spst9g02904 1113 Gene3D - 508 704 IPR023299 GO:0000166
Spst9g02904 1113 SFLD p-type atpase 480 856 IPR044492 -
Spst9g02904 1113 Gene3D - 495 849 IPR023214 -
Spst9g02904 1113 FunFam Calcium-transporting ATPase 197 254 - -
Spst9g02904 1113 FunFam Calcium-transporting ATPase 48 104 - -
Spst9g02904 1113 PRINTS P-type cation-transporting ATPase superfamily signature 322 336 - -
Spst9g02904 1113 PRINTS P-type cation-transporting ATPase superfamily signature 498 512 - -
Spst9g02904 1113 PRINTS P-type cation-transporting ATPase superfamily signature 828 840 - -
Spst9g02904 1113 PRINTS P-type cation-transporting ATPase superfamily signature 719 729 - -
Spst9g02904 1113 PRINTS P-type cation-transporting ATPase superfamily signature 804 823 - -
Spst9g02904 1113 PRINTS P-type cation-transporting ATPase superfamily signature 697 708 - -
Spst9g02904 1113 PANTHER CATION TRANSPORTING ATPASE 102 1089 - -
Spst9g02904 1113 Pfam Cation transporting ATPase, C-terminus 889 932 IPR006068 -
Spst9g02904 1113 Pfam Cation transporting ATPase, C-terminus 950 1087 IPR006068 -
Spst9g02904 1113 Pfam Cation transporter/ATPase, N-terminus 146 214 IPR004014 -
Spst9g02904 1113 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 504 709 IPR023299 GO:0000166
Spst9g02904 1113 ProSitePatterns E1-E2 ATPases phosphorylation site. 500 506 IPR018303 -
Spst9g02904 1113 FunFam Calcium-transporting ATPase 508 704 - -
Spst9g02904 1113 SMART Cation_ATPase_N_a_2 148 219 IPR004014 -
Spst9g02904 1113 MobiDBLite consensus disorder prediction 20 40 - -
Spst9g02904 1113 NCBIfam HAD-IC family P-type ATPase 439 534 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst9g02904 1113 NCBIfam HAD-IC family P-type ATPase 771 884 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst9g02904 1113 SUPERFAMILY Calcium ATPase, transmembrane domain M 148 1089 IPR023298 -
Spst9g02904 1113 FunFam Calcium-transporting ATPase 697 849 - -
Spst9g02904 1113 Pfam Ca2+-ATPase N terminal autoinhibitory domain 38 80 IPR024750 GO:0005516
Spst9g02904 1113 FunFam Calcium-transporting ATPase 244 374 - -
Spst9g02904 1113 NCBIfam calcium-translocating P-type ATPase, PMCA-type 138 932 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Spst9g02904 1113 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02904 Spst-Chr9 63104586 63126487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02904 1 1096 Primary Pumps ATPases AT5G57110 72.379 0.0 1572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02904 K01537 - gmx:100792945 1875.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02904 9 63104586 63126487 Spst9g02904 9 63104586 63126487 ECH
Spst3g03445 3 84192284 84215503 Spst9g02904 9 63104586 63126487 PCT