Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02887 ATGGAAGATGATGAGCCATGCATCACCAGTCTAAGCCTTGGATTAGGAATGGGGGGCCATGTGCCGAAGAAGGAGAAGCAGAAACTCCCTTGCTTGGACCTAACGTTTGATATTTGTCCTGAGGGGGGAAAAACCATTCACGTGGATCATCAACAATCAAAGCAACAACTTCATGATGATGATGATAAGGCAAAGGGGTTGGTATTATGTTTGAAGCACCCCAATGAAAACAACAGCCCTGATAGCAGCAACAATAGCAATAATGGCAGCAGAAAGAAACTGAAGCTTACAAAGGAGCAATCAGCCACCCTTGAGGATATTTTCAAGCTTCATAGCACTCTTAACCCGGCACAGAAACAGGCACTTGCTGAGCAATTGAATTTAAAGCATAGGCAGGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGCTGAAGCAAACAGAGGTGGATTGCGAGTTCCTGAAGAAATGTTGTGAGAAACTCACGGATGAGAATCTGAGGCTAAAGAAGGAACTGCAAGAGCTGCGCGCACAAAAGATTGGACCAAAACCATTGTACATTCAACTCTCCAAGGCCACAACCTTGACCATTTGTTCATCATGCGAGAAAGAATTGAAGCCCAATGAAGGGAACAAAGGAGGCATTTCCAATGTGGTCCGAAACAGCAGCCACAAATTGCAGAACAGCGTAGGGTTAAAGGGCATTTAG 714 0.4482 MEDDEPCITSLSLGLGMGGHVPKKEKQKLPCLDLTFDICPEGGKTIHVDHQQSKQQLHDDDDKAKGLVLCLKHPNENNSPDSSNNSNNGSRKKLKLTKEQSATLEDIFKLHSTLNPAQKQALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQKIGPKPLYIQLSKATTLTICSSCEKELKPNEGNKGGISNVVRNSSHKLQNSVGLKGI 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02887 237 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 210 - -
Spst9g02887 237 SUPERFAMILY Homeodomain-like 77 148 IPR009057 -
Spst9g02887 237 Gene3D - 69 146 - -
Spst9g02887 237 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Spst9g02887 237 Coils Coil 146 180 - -
Spst9g02887 237 MobiDBLite consensus disorder prediction 75 91 - -
Spst9g02887 237 MobiDBLite consensus disorder prediction 72 96 - -
Spst9g02887 237 Pfam Homeobox associated leucine zipper 147 180 IPR003106 GO:0006355|GO:0043565
Spst9g02887 237 Pfam Homeodomain 91 145 IPR001356 GO:0003677
Spst9g02887 237 CDD homeodomain 91 148 IPR001356 GO:0003677
Spst9g02887 237 SMART HOX_1 89 151 IPR001356 GO:0003677
Spst9g02887 237 SMART halz 147 190 IPR003106 GO:0006355|GO:0043565
Spst9g02887 237 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02887 Spst-Chr9 63001356 63002489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02887 81 205 Homeobox Transcription Factor Family AT3G60390 68.000 6.32e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst9g02887 Homeodomain 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02887 - K09338 vra:106760072 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03426 3 84056706 84057913 Spst9g02887 9 63001356 63002489 PCT