Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02882 ATGATACCAACTCATCGTTATTCATTGTCTTCTCCTATGCCTATAGATCTTAACGAAGATCACACCCACATGCTCTTCAGTACAAACCATCTAGCCTCTTCTTCATCTTCTCTATCTAATTTTATTCTCCTCAATCCAGATCAAGATCAAGGAGGATCTTGCCATTGGGAATCAAAATCCTTACAAAGTGATGAAGAGGTCGAGAAGATAGTTCTTTCCAGTGGATCATGGAATCATGCAGCAGAGAAGATTGACAAGAGAAGTGATCACAAGCTGAGAGTTTGGAAGAAAGAAGAGGAGTGTGAAAGTCTTCAAAGAGGTGAAGATAGTTCTACGAGGTGGATGCCTTCAAAGAAGAGAACGGTGCGGAGGATTAAGGTGTCAGATCAAACGGGATCTGATACAGCATGCATCTCAAACTCTAAGAAGTTCAAGTATGAAGAAAAAAATCCACCACTATCACTGGTAGGAACTGATGACAGTCACTATAATTCTTCTTCAAACCACAACAATGTCACTGTTAGGGTTTGTGCTGATTGTCACACAACTAAGACCCCTCTGTGGAGGAGTGGACCAAAAGGTCCAAAGTCACTTTGCAATGCATGCGGAATTCGACAAAGGAAGGCAAGACGCGCCATTGCTGCAGCTGCAACAGCAATTGGAACGAATCTGGTGAAGGCTGAGAAATCTGAAATGAAGAAGGGGAACAAGTTACATAACAAAGGGATGAAGTCCAAAACTGGGGGTGCACAAGTGTTGAAAAAGAAGAGTAAACCTGGAGCCAAGTATAGAAAGAGGTTTGGTGCTTTCGAGGATTTGACAGTAAGATTGAGTAAGAACCTCCAACAAGTTTTCCCTCAGGATGAAAAAGAGGCTGCAATCTTGCTAATGGCTTTATCTCATGGCCTACTTCACGGCTTCCCCTCACATCGTTATATCACTTAG 945 0.4243 MIPTHRYSLSSPMPIDLNEDHTHMLFSTNHLASSSSSLSNFILLNPDQDQGGSCHWESKSLQSDEEVEKIVLSSGSWNHAAEKIDKRSDHKLRVWKKEEECESLQRGEDSSTRWMPSKKRTVRRIKVSDQTGSDTACISNSKKFKYEEKNPPLSLVGTDDSHYNSSSNHNNVTVRVCADCHTTKTPLWRSGPKGPKSLCNACGIRQRKARRAIAAAATAIGTNLVKAEKSEMKKGNKLHNKGMKSKTGGAQVLKKKSKPGAKYRKRFGAFEDLTVRLSKNLQQVFPQDEKEAAILLMALSHGLLHGFPSHRYIT 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02882 314 SMART GATA_3 171 223 IPR000679 GO:0006355|GO:0043565
Spst9g02882 314 CDD ZnF_GATA 176 208 IPR000679 GO:0006355|GO:0043565
Spst9g02882 314 ProSiteProfiles GATA-type zinc finger domain profile. 171 207 IPR000679 GO:0006355|GO:0043565
Spst9g02882 314 FunFam GATA transcription factor 21 171 255 - -
Spst9g02882 314 ProSitePatterns GATA-type zinc finger domain. 177 202 IPR000679 GO:0006355|GO:0043565
Spst9g02882 314 Gene3D - 173 266 IPR013088 GO:0006355|GO:0008270
Spst9g02882 314 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 4 306 - -
Spst9g02882 314 MobiDBLite consensus disorder prediction 230 258 - -
Spst9g02882 314 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 173 210 - -
Spst9g02882 314 Pfam GATA zinc finger 177 210 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02882 Spst-Chr9 62974582 62976028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02882 110 306 C2C2-Gata Transcription Factor Family AT4G26150 37.104 1.20e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst9g02882 GATA 5.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02882 - - gmx:100780875 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03413 3 83960550 83961835 Spst9g02882 9 62974582 62976028 PCT