Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02866 ATGCACTCCATGGAAAACGTTTTCTCTCTCCCTGTAGCCGCCAGGGCTGATTTTATCCAATTTCTGGTGCAGTCTTTTGGTTGCAGTTATATTTGTCTATGGGCATGTGATTCCATTTCACCCAATCGTTTGTGCTTCTTGGATGGTATCTACAATGTAAGAAACAACCAACCAAGCTCTAGTTTGGGGACTGTGGCAGAACAACTTTTCAGTCAGTTCCGGACTTTAACATTTGATGTTAATGATGACCGTGTTCCTGGACTAGCTTTTAGGAACCATCATCCCTATCTAGAGCTGCAACAATTGGAACTTCTGAGACTAGCATCAACAGATATACAAACACAATTCTTTCAGACTGCTGTTTTCATGGGGTGTAACAAAGGAGAAATTGAGCTTGGTTTCTTAAATATGTCCCAAGTTGACATTCAAACAGCACTTAGGAGTTTGTTTCCTGAGGATTTTTCTACTAGACAGTCCCAGCAAATTGATCAAAACCCTCCTACATCATCTTCATCTTCTTTGAGATCAATATCCACAGGTAGCCCTGAATACTCGTCTCTTCTGTTCAGTATTCCAGGCACTTCTCAATCCCACTTTCCTGAGACCCTTGGAGGAGCAAGAGTGCCCCCAATGCAGCCAGTGCCAAACACAGCCACCAGTCCTCACCAACAAGCCATTCAAGCATTGGCACAACCCTCTCTAACCCAATTCCCCACACCAGAAAGTGAACAGGATGCAATCATGAGAGCAATTCTCCACGTTATATCTCCAACTTCTCAACAGCACCAAAACTTGCCTTTTGCTCCTGTGGTGCATCCGGAAGCTAGTGCTTTCAAGAGGTATAGATCTGACATTGGTCCTCATATGGCTTCCAATTTCAGAAGGCAAAGCCTCATGAATAGATCCTTAGCATTCTTCAGAAAGTTAAATTTTATGAGAATGAGAGAACGCATTCAAGCAACGTCCCGTCCCACTAATACCCAGCTGCATCATATGATATCAGAGAGAAGAAGGCGTGAGAAACTAAACGAGAATTTCCAAGCACTTAGAGCACTACTTCCTCCTGGAACAAAGAAAGACAAAGCGTCTATACTAATAGCAGCAAAGGAGACACTGAGCTCTCTTATGGCTGAAGTTGATCAACTAAGCAAAAGGAATCAGGGTTTGACATCACTTTTGCCACCCAAAGAATCTTCATCCGAAGAAACCAAGGCTACAGTATCACCAAATGAAGGATTAAGTGTCCGAGTTTCACATGTACCCGAATCAAGCTCGTCACAAGAGCGAATGGTGGACTTGCATGTGAATGTGAGAGGACAAGTTTCTCAAGTTGATTTGTTAATCTGCTTATTGGAATTCCTAAAACGAGATCGCAACTTGAGCTTGGTTTCCATGGACGCAAGCACCCACATTGCAGAAGGGAATAATGTTCTTCGTCAACTAACCTTTAGATTAAGGATTATTCAGGGAAGTGAATGGGACCAGTGTGCCTTCGAGGAAGCAGTGAGAAGAGTGGTTGCTGACTTGGCACAGTACCAAGAAGACCAATAA 1551 0.4326 MHSMENVFSLPVAARADFIQFLVQSFGCSYICLWACDSISPNRLCFLDGIYNVRNNQPSSSLGTVAEQLFSQFRTLTFDVNDDRVPGLAFRNHHPYLELQQLELLRLASTDIQTQFFQTAVFMGCNKGEIELGFLNMSQVDIQTALRSLFPEDFSTRQSQQIDQNPPTSSSSSLRSISTGSPEYSSLLFSIPGTSQSHFPETLGGARVPPMQPVPNTATSPHQQAIQALAQPSLTQFPTPESEQDAIMRAILHVISPTSQQHQNLPFAPVVHPEASAFKRYRSDIGPHMASNFRRQSLMNRSLAFFRKLNFMRMRERIQATSRPTNTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILIAAKETLSSLMAEVDQLSKRNQGLTSLLPPKESSSEETKATVSPNEGLSVRVSHVPESSSSQERMVDLHVNVRGQVSQVDLLICLLEFLKRDRNLSLVSMDASTHIAEGNNVLRQLTFRLRIIQGSEWDQCAFEEAVRRVVADLAQYQEDQ 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02866 516 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 326 375 IPR011598 GO:0046983
Spst9g02866 516 Coils Coil 332 352 - -
Spst9g02866 516 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 108 508 IPR044658 -
Spst9g02866 516 MobiDBLite consensus disorder prediction 199 223 - -
Spst9g02866 516 MobiDBLite consensus disorder prediction 155 179 - -
Spst9g02866 516 MobiDBLite consensus disorder prediction 386 425 - -
Spst9g02866 516 Coils Coil 365 392 - -
Spst9g02866 516 CDD bHLH_AtbHLH_like 331 383 IPR045239 -
Spst9g02866 516 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 390 IPR036638 GO:0046983
Spst9g02866 516 Gene3D - 325 398 IPR036638 GO:0046983
Spst9g02866 516 SMART finulus 332 381 IPR011598 GO:0046983
Spst9g02866 516 Pfam Helix-loop-helix DNA-binding domain 330 375 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02866 Spst-Chr9 62832879 62836695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02866 15 511 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 40.561 1.37e-96 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst9g02866 HLH 5.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02866 - - gmx:100807098 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02866 9 62832879 62836695 Spst9g02866 9 62832879 62836695 ECH
Spst3g03400 3 83757594 83760658 Spst9g02866 9 62832879 62836695 PCT