Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02846 ATGATGAAGAAAGGGAGCTTAAGCTCCGGGCTCAAACTCACTATTCCTGCATCTAATCGGGGTTCATTTACCAAGTCTGGGTCTGAAAATGAAACGTTCAAGGCAGCGGACTTGCTTGTCAACAAGGAAGGAGTTCGAGTTGTTTCTGGGAATGAAGTGGAAGCTCCACCACCAATCACGCCACTAGACAACCAGTTAAACTTAGCAGATATTGATACAGTCAAAGTGATTGGAAAAGGAAATGGAGGGATAGTGCAGTTGGTACAACACAAATGGACTAATCAATTTTTTGCATTGAAGGAAATTCAAATGAATATTGAGGAGCCTATTCGCAGGCAGATAGCACTAGAGCTAAAAATTAATCAATCAGCACAATGTCCATATGTTGTTGTCTGCTACCAGTCATTCTATCATAATGGTGTCATATCAATCATATTAGAGTACATGGATGGAGGGTCCTTAGAAGATCTTCTTAACAAAGTTAAAACAATTCCAGAGTCATACCTTGCTGCCATCTGCAAGCAGGTGCTGAAGGGTTTGATGTATCTTCACCATGAAAAATACATTATTCACAGGGACTTAAAACCTTCTAATCTGCTGATAAATCATGGAGGGGAGGTAAAGATTACTGACTTTGGTGTAAGCATAATCATGGAAAATACATCTGGTCAAGCAAATACTTTCATTGGCACACACAGCTATATGTCTCCAGAGAGAATCATTGGTAACCAGAATGGCTATGACTACAAAAGTGATATATGGAGCTTGGGGCTGATCTTGCTCAAGTGTGCCACGGGGAAGTTTCCATATACACCACCAGATCAACGTGAAGGATGGGAAAATCTTTTCCAGCTTATTGAAGTCATTGTGGAAAAACCTTCCCCCATTGCTCCATCAGATGATTTTTCTCCAGAATTTTGCTCATTTATCTCAGCATGTTTACAGAAAAATCCAAGGGATAGACCGTCAGCTCGGGACCTTATAAACCATCCTTTTATCAACTTGTATGAGGATTTGAATGTGGATCTTTCAGCCTATTTCTCCAACGCAGGAACTACACTTGCAACCATATAG 1074 0.405 MMKKGSLSSGLKLTIPASNRGSFTKSGSENETFKAADLLVNKEGVRVVSGNEVEAPPPITPLDNQLNLADIDTVKVIGKGNGGIVQLVQHKWTNQFFALKEIQMNIEEPIRRQIALELKINQSAQCPYVVVCYQSFYHNGVISIILEYMDGGSLEDLLNKVKTIPESYLAAICKQVLKGLMYLHHEKYIIHRDLKPSNLLINHGGEVKITDFGVSIIMENTSGQANTFIGTHSYMSPERIIGNQNGYDYKSDIWSLGLILLKCATGKFPYTPPDQREGWENLFQLIEVIVEKPSPIAPSDDFSPEFCSFISACLQKNPRDRPSARDLINHPFINLYEDLNVDLSAYFSNAGTTLATI 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02846 357 Gene3D Phosphorylase Kinase; domain 1 57 150 - -
Spst9g02846 357 Pfam Protein kinase domain 73 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g02846 357 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 21 335 - -
Spst9g02846 357 FunFam Mitogen-activated protein kinase kinase 6 152 352 - -
Spst9g02846 357 CDD PKc_MAPKK_plant_like 69 337 - -
Spst9g02846 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Spst9g02846 357 Gene3D Transferase(Phosphotransferase) domain 1 151 354 - -
Spst9g02846 357 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Spst9g02846 357 SUPERFAMILY Protein kinase-like (PK-like) 69 339 IPR011009 -
Spst9g02846 357 SMART serkin_6 71 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g02846 357 ProSiteProfiles Protein kinase domain profile. 71 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g02846 357 FunFam Mitogen-activated protein kinase kinase 6 41 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02846 Spst-Chr9 62646113 62650844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02846 28 354 MAP Kinase Kinase Gene Family AT4G26070 64.220 7.17e-162 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Spst9g02846 Pkinase 1.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02846 K20603 - gmx:100789241 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02846 9 62646113 62650844 Spst9g02846 9 62646113 62650844 ECH
Spst3g03384 3 83524061 83528052 Spst9g02846 9 62646113 62650844 PCT