Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02840 ATGGACACTGGTGGTCACTACAACCCCCGCACAGTTGAAGAGGTTTTCCGGGACTTCAAGGGCCGCAGGGCCGGCATGATCAAAGCCCTCACCACTGATGTTGAGGAATTTTACCAGCAGTGCGATCCTGAAAAGGAGAATTTATGTCTGTATGGGTTCCCCAATGAACAATGGGAAGTTAATTTGCCAGCTGAAGAAGTTCCTCCAGAACTTCCCGAGCCTGCATTGGGCATAAATTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGTTATCTTTAGTTGCTGTTCACAGTGATGCATGGCTACAATCAGTGGCTTTCTACTTTGGGGCAAGATTTGGTTTTGATAAAGCTGACAGGAAACGCCTTTTCACTATGATTAATGATCTGCCAACAATATTCGAGGTTGTAACAGGATCTGCAATGAAACAGGCAAAGGAGAAGTCATCAGACCGCAACAGCAGCAAATCAAAGTCCGGCTCGAAAGGGAGAGTATCTGAATCAGTGAAGTATGTAAAGCAAGAAGTGAAGGAGGAAGAGGAGGTATTGGACGAAGAAGACGATGAAGAGCATGGGGAGACCTTGTGTGGTGCATGTGGGGAGAACTACGCATCAGATGAGTTCTGGATTTGTTGTGACATTTGCGAGAAGTGGTTTCATGGCAAGTGTGTGAAGATCACTCCTGCCAGGGCTGAGCACATCAAACACTACAAGTGCCCTTCATGCAGCAACAAGAGAGCAAAGCCTTGA 750 0.468 MDTGGHYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLQSVAFYFGARFGFDKADRKRLFTMINDLPTIFEVVTGSAMKQAKEKSSDRNSSKSKSGSKGRVSESVKYVKQEVKEEEEVLDEEDDEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKHYKCPSCSNKRAKP 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02840 249 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Spst9g02840 249 CDD PHD_AL_plant 195 245 IPR044104 -
Spst9g02840 249 SMART PHD_3 195 243 IPR001965 -
Spst9g02840 249 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Spst9g02840 249 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Spst9g02840 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 244 IPR013083 -
Spst9g02840 249 Coils Coil 169 189 - -
Spst9g02840 249 SUPERFAMILY FYVE/PHD zinc finger 185 247 IPR011011 -
Spst9g02840 249 PANTHER CPG BINDING PROTEIN 8 248 IPR045104 GO:0006355|GO:0042393
Spst9g02840 249 Pfam PHD-finger 196 245 IPR019787 -
Spst9g02840 249 MobiDBLite consensus disorder prediction 144 189 - -
Spst9g02840 249 FunFam PHD finger alfin-like protein 188 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02840 Spst-Chr9 62604190 62607951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02840 7 248 Alfin-like Transcription Factor Family AT3G42790 74.793 6.43e-123 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Spst9g02840 Alfin 8.3e-70 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02840 K26274 - gmx:100170699 434.491